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RNA
•
reset
6
votes
5
replies
3.9k
views
Clustering differential expression results from voomWithQualityWeights
RNA
limma
rsem
edgeR
updated 7.1 years ago by
Gordon Smyth
50k • written 7.1 years ago by
hrishi27n
▴ 20
5
votes
5
replies
1.4k
views
Association analysis between gene expression and Phenotype
rna
singlecell
limma
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
hrishi27n
▴ 20
5
votes
4
replies
1.3k
views
Experiment design contrasts any time edgeR
DGE
rnaseq
RNA
edger
updated 7.0 years ago by
londonflavido
• 0 • written 7.0 years ago by
Pietro
▴ 40
4
votes
3
replies
2.2k
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation
rna
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
anthony.nash
▴ 20
3
votes
1
reply
1.7k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR
deseq2
RNA
differential expression
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
tyssowski
• 0
3
votes
6
replies
1.9k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA
rna-seq
science
bioinformatics
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
hrishi27n
▴ 20
3
votes
6
replies
2.0k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2
edgeR
RNA
limma
Normalization
18 months ago • updated 17 months ago
Sara
• 0
2
votes
7
replies
1.2k
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy
rna
hta2.0
r
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
Marco_aurelio
• 0
2
votes
1
reply
1.0k
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 23 months ago by
Gordon Smyth
50k • written 23 months ago by
Mikołaj Mierzejewski
• 0
2
votes
1
reply
823
views
DESeq2 statistic and design
deseq2
RNA
updated 5.1 years ago by
Michael Love
42k • written 5.1 years ago by
Merlin
▴ 10
2
votes
3
replies
1.2k
views
Number and percent of mapped reads from RNA seq analysis.
rna-seq
rna
updated 5.1 years ago by
Steve Lianoglou
★ 13k • written 5.1 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
722
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 20 months ago by
ATpoint
★ 4.1k • written 20 months ago by
Mohamed
▴ 30
1
vote
1
reply
1.3k
views
how to filter genes in significant module?
RNA
WGCNA
filter
4.9 years ago
modarzi
▴ 10
1
vote
1
reply
1.3k
views
Outliers - to remove or to not remove that is the question
outliers
rna
microarray
updated 7.0 years ago by
chris86
▴ 420 • written 7.0 years ago by
bhgyu
▴ 30
1
vote
0
replies
950
views
Job:
1 Computational Biologist and 1 Molecular Biologist
computational biology
molecular biology
RNA
r-loop
ncRNA
Job
5.6 years ago
l.brown
▴ 10
1
vote
1
reply
786
views
Description of the headers obtained from the Eligos2 output
methylation
RNA
native
epitranscriptomics
updated 2.2 years ago by
tcalvo
▴ 90 • written 2.2 years ago by
megha.hs28
▴ 10
1
vote
1
reply
794
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2
RNA
updated 4.0 years ago by
Michael Love
42k • written 4.0 years ago by
agsousa
• 0
1
vote
2
replies
1.6k
views
Is it necessary to standardize Combat in R?
RNA
Combat
sva
R
24 months ago • updated 23 months ago
takemoto
• 0
0
votes
2
replies
1.3k
views
Normalizzation indipentent data from RNAAeq experiment
rna
normalization
9.6 years ago
aristotele_m
▴ 40
0
votes
2
replies
1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt
ensembldb
RNA
ensembl
updated 13 months ago by
Johannes Rainer
★ 2.0k • written 13 months ago by
Christopher
• 0
0
votes
4
replies
5.0k
views
RNAseq Adjusting for Covariates?
RNA
rnaseq
Covariate
adjustment
deseq
updated 8.2 years ago by
Michael Love
42k • written 8.2 years ago by
sjs0282
• 0
0
votes
0
replies
1.5k
views
Finding candidate binding sites for RNA binding proteins in R
R
bioconductor
RNA
mRNA
RNA binding proteins
7.2 years ago
Walter F. Baumann
▴ 10
0
votes
1
reply
1.4k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2
RNA
rnaseq
updated 6.8 years ago by
Michael Love
42k • written 6.8 years ago by
hrishi27n
▴ 20
0
votes
1
reply
996
views
Time series comparison with DESEQ2
RNA
rnaseq
deseq2
updated 6.7 years ago by
Michael Love
42k • written 6.7 years ago by
hrishi27n
▴ 20
0
votes
0
replies
951
views
R code for finding wobble/redundant positions in an RNA string
r
code
rna
wobble
6.3 years ago
fawazfebin
▴ 60
0
votes
2
replies
890
views
DESeq and checkFullRank(modelMatrix)
RNA
DESeq2
updated 5.1 years ago by
Michael Love
42k • written 5.1 years ago by
Merlin
▴ 10
0
votes
0
replies
818
views
Job:
Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell
RNA
Data analysis
Bioinformatics
Job
4.8 years ago
jmaanaki
• 0
0
votes
6
replies
1.3k
views
Bizarre Dispersion Plots
deseq2
RNA
RNASeq
updated 4.2 years ago by
Michael Love
42k • written 4.2 years ago by
stephen.hartley
• 0
0
votes
3
replies
2.2k
views
Pearson correlation between gene expression and phenotype
edgeR
RNASeq
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
weichengz
▴ 10
0
votes
1
reply
298
views
Running Deseq2 with all samples vs samples for each comparison separately
RNA
DESeq2
updated 3 months ago by
Michael Love
42k • written 3 months ago by
manuel
• 0
0
votes
2
replies
841
views
Rsubread align --R session aborts
RNA
Alignment
Rsubread
21 months ago • updated 20 months ago
sreekalasn
• 0
0
votes
4
replies
1.3k
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma
edgeR
rna
3.1 years ago
Nirad
▴ 10
0
votes
0
replies
540
views
Correct GFF3 translation for FeatureCounts
RNASeq
FeatureCounts
Rna
19 months ago
rridley3
• 0
0
votes
0
replies
789
views
Job:
Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData
RNA
DifferentialExpression
21 months ago
António Miguel de Jesus Domingues
▴ 510
0
votes
0
replies
606
views
Cross-cultivar RNA-seq analysis
RNA
Normalization
3.1 years ago
nancy
• 0
0
votes
1
reply
876
views
Ensembl dataset version
tximport
rna
rnaseqGene
biomaRt
updated 2.4 years ago by
ATpoint
★ 4.1k • written 2.4 years ago by
st3472
• 0
0
votes
5
replies
514
views
Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 12 weeks ago by
James W. MacDonald
65k • written 3 months ago by
Gordon
• 0
37 results • Page
1 of 1
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Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
alex.pico
▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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