Showing : Software • reset
3
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0
replies
47
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News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
2 days ago shepherl 3.9k
0
votes
7
replies
692
views
News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
9 weeks ago • updated 10 days ago shepherl 3.9k
0
votes
1
reply
261
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News: Bioconductor 3.19 Release Schedule
Release release Software
8 weeks ago • updated 5 weeks ago shepherl 3.9k
5
votes
1
reply
436
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.9k
2
votes
1
reply
1.0k
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq microbiome Software
updated 7 months ago by ★ 4.1k • written 7 months ago by ▴ 10
0
votes
0
replies
422
views
News: Bioconductor 3.18 Release Schedule
Release Software release
8 months ago shepherl 3.9k
0
votes
1
reply
412
views
Generate false reads for testing
mgu74bv2cdf Software Alignment
updated 11 months ago by 65k • written 11 months ago by • 0
1
vote
8
replies
1.5k
views
News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.1 years ago by 3.9k
0
votes
0
replies
595
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
12 months ago shepherl 3.9k
3
votes
6
replies
1.1k
views
News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 13 months ago by • 0 • written 14 months ago by 3.9k
0
votes
0
replies
558
views
News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
13 months ago shepherl 3.9k
0
votes
0
replies
772
views
Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
17 months ago Robert Castelo ★ 3.3k
1
vote
0
replies
792
views
News: Bioconductor 3.16 is Released!
Release Packages Bioconductor Software
18 months ago shepherl 3.9k
0
votes
0
replies
724
views
News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release Devel Bioconductor Software
19 months ago shepherl 3.9k
8
votes
0
replies
856
views
News: Bioconductor 3.15 is Released!
Software Release Packages Bioconductor
2.0 years ago • updated 24 months ago shepherl 3.9k
0
votes
5
replies
1.3k
views
News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
2.6 years ago • updated 2.0 years ago shepherl 3.9k
0
votes
0
replies
617
views
News: New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release Software Bioconductor Devel
2.1 years ago shepherl 3.9k
8
votes
0
replies
892
views
News: Bioconductor 3.14 is Released!
release Packages Software Release Bioconductor
2.5 years ago shepherl 3.9k
0
votes
0
replies
854
views
Job: Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data immunology software vaccinology
2.6 years ago Daniel • 0
5
votes
0
replies
1.0k
views
News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
3.0 years ago • updated 2.9 years ago shepherl 3.9k
2
votes
2
replies
1.5k
views
News: Final List of Deprecated Packages for Bioc3.13
Workflow Software ExperimentData Deprecation
3.4 years ago • updated 3.0 years ago shepherl 3.9k
4
votes
0
replies
944
views
News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
3.5 years ago shepherl 3.9k
1
vote
2
replies
1.4k
views
News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
3.6 years ago • updated 3.5 years ago shepherl 3.9k
0
votes
0
replies
1.1k
views
Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
3.5 years ago Vincent J. Carey, Jr. 6.7k
2
votes
4
replies
1.2k
views
Bioconductor package development
package R software development
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
3
votes
0
replies
1.4k
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
3.7 years ago • updated 3.6 years ago shepherl 3.9k
0
votes
2
replies
793
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 3.7 years ago by 3.9k • written 3.7 years ago by • 0
0
votes
0
replies
821
views
News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
3.9 years ago shepherl 3.9k
0
votes
2
replies
818
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
0
votes
3
replies
1.0k
views
News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 4.0 years ago by ▴ 160 • written 4.1 years ago by 3.9k
4
votes
0
replies
816
views
News: Bioconductor 3.11 is Released!
software bioconductor release packages News
4.0 years ago shepherl 3.9k
0
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0
replies
779
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.2 years ago shepherl 3.9k
0
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1
reply
855
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.3 years ago shepherl 3.9k
1
vote
1
reply
1.1k
views
How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
updated 4.4 years ago by ▴ 10 • written 4.4 years ago by ▴ 40
0
votes
0
replies
882
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.5 years ago shepherl 3.9k
0
votes
2
replies
1.6k
views
News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
4.6 years ago • updated 4.5 years ago shepherl 3.9k
2
votes
2
replies
1.0k
views
News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
4.5 years ago shepherl 3.9k
6
votes
0
replies
854
views
News: Bioconductor 3.10 is released!!
release software packages bioconductor News
4.5 years ago shepherl 3.9k
0
votes
0
replies
850
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.7 years ago • updated 4.6 years ago shepherl 3.9k
2
votes
0
replies
2.3k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
4.6 years ago Laurent Gatto 1.6k
0
votes
1
reply
1.0k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
4.8 years ago • updated 4.7 years ago shepherl 3.9k
0
votes
0
replies
747
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Job: Software Developer - BC Cancer Research Center, Vancouver BC
software bioinformatics sequecing Job
4.9 years ago jmaanaki • 0
0
votes
3
replies
1.1k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.9 years ago shepherl 3.9k
0
votes
1
reply
868
views
News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
5.0 years ago • updated 4.9 years ago shepherl 3.9k
0
votes
1
reply
1.2k
views
News: List of Deprecated Package Bioc 3.9
deprecate release devel software experimentdata News
5.2 years ago shepherl 3.9k
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
0
votes
1
reply
1.1k
views
News: List of Deprecated Package Bioc 3.9
deprecate release software devel News
5.3 years ago shepherl 3.9k
0
votes
0
replies
1.1k
views
News: DEADLINE: All packages to pass R CMD build and R CMD check
release software experimentdata workflows News
6.0 years ago shepherl 3.9k
0
votes
8
replies
2.2k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation software software error
updated 7.9 years ago by ★ 4.3k • written 7.9 years ago by ▴ 10
1
vote
3
replies
1.6k
views
Are there any bioconductor github mirrors for data packages?
software bioc-devel developers R
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
50 results • Page 1 of 1
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Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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