Showing : agilent • reset
3
votes
4
replies
5.1k
views
LIMMA and Agilent single color
Annotation probe limma agilent
13.4 years ago • updated 7.3 years ago Gordon Smyth 50k
2
votes
1
reply
4.0k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
8.5 years ago Konstantinos Yeles ▴ 80
3
votes
3
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3.9k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 8.2 years ago by 65k • written 8.2 years ago by ▴ 80
6
votes
4
replies
3.1k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 30
2
votes
4
replies
3.0k
views
exporting limma log2 data
limma export log2 data agilent
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 110
0
votes
2
replies
2.5k
views
which Agilent annotation db?
agilent annotation
8.9 years ago Frederico Moraes Ferreira ▴ 100
3
votes
9
replies
2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.3 years ago • updated 8.2 years ago Konstantinos Yeles ▴ 80
0
votes
9
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2.3k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
7.5 years ago Maximilian ▴ 10
2
votes
4
replies
2.3k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 9.5 years ago by 50k • written 9.5 years ago by • 0
1
vote
12
replies
2.2k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 30
1
vote
2
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2.1k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 240
2
votes
2
replies
2.1k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 9.5 years ago by 50k • written 9.5 years ago by • 0
1
vote
2
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2.0k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 8.8 years ago by 50k • written 8.8 years ago by • 0
2
votes
5
replies
2.0k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by ▴ 10
2
votes
11
replies
2.0k
views
Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
6.1 years ago CantExitVIM ▴ 10
3
votes
9
replies
2.0k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
0
votes
2
replies
1.9k
views
Agilent Data Normalization Method
limma agilent
updated 8.5 years ago by 50k • written 8.5 years ago by • 0
0
votes
7
replies
1.8k
views
Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 6.9 years ago by ★ 1.0k • written 6.9 years ago by ▴ 30
0
votes
3
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1.7k
views
problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
9.2 years ago wd ▴ 30
0
votes
1
reply
1.6k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 9.2 years ago by 50k • written 9.3 years ago by ▴ 150
5
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10
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1.6k
views
Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
8.3 years ago pm2015 • 0
0
votes
2
replies
1.4k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 9.2 years ago by 50k • written 16.1 years ago by ★ 1.1k
1
vote
2
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1.3k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 8.4 years ago by 65k • written 8.4 years ago by • 0
2
votes
3
replies
1.3k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 8.4 years ago by 65k • written 8.4 years ago by ★ 3.9k
0
votes
2
replies
1.3k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.5 years ago by 50k • written 7.5 years ago by ▴ 10
0
votes
2
replies
1.3k
views
microarray agilent data
microarray agilent limma
updated 8.8 years ago by ▴ 130 • written 8.8 years ago by • 0
3
votes
4
replies
1.2k
views
Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.1k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 8.8 years ago by ★ 1.0k • written 8.8 years ago by ▴ 320
0
votes
1
reply
1.1k
views
annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 7.3 years ago by 65k • written 7.3 years ago by ▴ 40
1
vote
1
reply
1.1k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 6.1 years ago by 50k • written 6.1 years ago by • 0
0
votes
7
replies
1.0k
views
Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
2.8 years ago AB • 0
1
vote
2
replies
1.0k
views
covert from RGList to uRNAList
agilent agimicrorna
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 30
1
vote
2
replies
958
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 10
0
votes
0
replies
787
views
Processing of agilent data
agilent
6.2 years ago Agaz Hussain Wani ▴ 260
3
votes
1
reply
768
views
Create a '.db' package for agilent
R agilent microarray
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
0
votes
1
reply
687
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 2.5 years ago by 50k • written 2.5 years ago by • 0
0
votes
1
reply
666
views
Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 22 months ago by 50k • written 22 months ago by • 0
37 results • Page 1 of 1
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Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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