Showing : annotation • reset
1
vote
11
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4.8k
views
oligo package requires the annotation package pd.ht.mg.430.pm - where is it?
oligo microarray annotation
updated 10.1 years ago by 68k • written 10.1 years ago by • 0
0
votes
0
replies
1.0k
views
invalid factor level when mapping human ENSEMBLPROT to chicken ENSEMBLEPROT with inparanoid
annotation
10.1 years ago bruno.gotti • 0
1
vote
5
replies
2.9k
views
AnnotationHub has no (not all) data
annotation bioconductor
updated 10.2 years ago by ▴ 10 • written 10.5 years ago by • 0
2
votes
2
replies
1.1k
views
Is there any sample scripts for creating AnnotationData Packages (like KEGG.db or GO.db) ?
annotation
10.2 years ago knishida ▴ 20
0
votes
5
replies
2.9k
views
easyRNAseq annotation file
easyrnaseq annotation
10.2 years ago kylvalda • 0
0
votes
5
replies
2.3k
views
Rsubread, featureCounts misses some exons
annotation featurecounts rsubread
updated 10.2 years ago by 53k • written 10.2 years ago by ▴ 80
5
votes
4
replies
1.4k
views
How can I create ChipDb for Solanum lycopersicum?
annotation
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 20
1
vote
1
reply
851
views
dataset TxDb.Mmusculus.UCSC.mm9.knownGene showing exons with gene_id but there is no such gene
annotation
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 80
3
votes
3
replies
1.5k
views
org.Hs.eg.db output has more lines than the input- I need to combine the input and output
org.Hs.eg.db annotation bioconductor
updated 10.2 years ago by ★ 29k • written 10.2 years ago by • 0
0
votes
1
reply
1.2k
views
use hg19 genome in dexseq
annotation
10.2 years ago efratdahan21 • 0
0
votes
3
replies
3.8k
views
Annotation DB for ArrayStar lncRNA arrays
arraystar lncRNA annotation annotationdbi
updated 10.2 years ago by • 0 • written 10.7 years ago by ▴ 430
0
votes
0
replies
1.4k
views
plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma diffSplice plotSplice exons annotation
10.2 years ago Jose M Garcia Manteiga ▴ 310
1
vote
5
replies
2.4k
views
Inconsistent Annotations in illuminaHumanv3.db
illuminahumanv3 annotation microarray
10.2 years ago Peter Humburg ▴ 30
2
votes
2
replies
2.5k
views
Goseq supported organism (felcat5) has an error when testing
goseq genesetenrichment annotation
updated 10.2 years ago by ▴ 320 • written 10.2 years ago by ▴ 20
0
votes
0
replies
1.3k
views
sqliteSendQuery(con, statement, bind.data) error using makePdInfoPackage for Nimblegen array
microarray R oligo micro array data annotation
10.2 years ago zenekzkk • 0
0
votes
1
reply
1.0k
views
GO-term comparison between two genomic regions
topgo GO annotation
updated 10.2 years ago by 68k • written 10.2 years ago by • 0
2
votes
1
reply
1.6k
views
Best way to do quality control and analysis on Exon arrays
Annotation Cancer affy exonmap Annotation Cancer affy exonmap
updated 10.3 years ago by ▴ 10 • written 16.4 years ago by ★ 1.9k
1
vote
2
replies
2.4k
views
Problems with the genes name
annotation software error microarray oligo annotationdbi
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 10
0
votes
6
replies
2.5k
views
problem using makeTxDbFromGFF and exonsBy() functions
annotation genomicfeatures
updated 10.3 years ago by ★ 1.3k • written 10.3 years ago by ▴ 10
0
votes
2
replies
1.5k
views
GO annotation missing in org.EcSakai.eg.db?
org.EcSakai.eg.db Annotation go clusterProfiler
updated 10.3 years ago by 68k • written 10.3 years ago by ★ 1.2k
1
vote
2
replies
2.1k
views
retrieve genes near enhancers
annotation
10.3 years ago doublehelixlf ▴ 10
4
votes
13
replies
5.9k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation blast biostrings
updated 10.3 years ago by 25k • written 10.3 years ago by • 0
4
votes
4
replies
3.1k
views
Annotation package for Codelink 55K Human Array
r annotation codelink
updated 10.3 years ago by ▴ 760 • written 10.3 years ago by ▴ 260
0
votes
2
replies
6.4k
views
How to read bgx files in R
microarray annotation illumina
10.3 years ago kanacska ▴ 10
0
votes
2
replies
4.4k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 10.3 years ago by • 0 • written 12.6 years ago by ★ 8.2k
3
votes
2
replies
2.2k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
11
votes
0
replies
6.5k
views
Tutorial: Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges Annotation RNAseq visualization Tutorial
10.3 years ago Martin Morgan 25k
1
vote
2
replies
1.7k
views
Rsamtools and dbnsfp
bioconductor rsamtools annotation variantannotation
10.3 years ago jhomsy • 0
2
votes
2
replies
3.2k
views
Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
10.3 years ago metamaden ▴ 10
2
votes
2
replies
3.1k
views
eset annotation issues, plus generate heatmap with correct gene symbol as row label
eset annotation
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 30
0
votes
3
replies
720
views
Genes missing from mta10sttranscriptcluster.db?
annotation
updated 10.4 years ago by 68k • written 10.4 years ago by • 0
6
votes
5
replies
2.2k
views
Bug: mappedkeys(ath1121501ACCNUM) returns character(0)
annotation arabidopsis thaliana
10.4 years ago knishida ▴ 20
5
votes
7
replies
9.4k
views
Creating an Expression Set with a csv file
eset annotation
updated 10.4 years ago by ▴ 760 • written 10.4 years ago by ▴ 20
4
votes
0
replies
1.9k
views
News: Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing transcription variantfiltering annotation News
10.4 years ago Matthew Ritchie ▴ 1000
2
votes
5
replies
2.0k
views
AnnotationForge/SQLForge: how to add data after creating the new package
annotation custom platform
10.4 years ago Sylvain Foisy ▴ 80
2
votes
1
reply
1.9k
views
design and annotation question using DESeq2
deseq2 annotation multiple factor design
updated 10.4 years ago by 43k • written 10.4 years ago by ▴ 10
0
votes
2
replies
4.5k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 10.4 years ago by ★ 1.6k • written 10.4 years ago by ▴ 130
0
votes
3
replies
2.7k
views
enrichGO() for unsupported organisms - library(clusterProfiler)
clusterProfiler go annotation
10.4 years ago cristina della beffa ▴ 30
0
votes
0
replies
1.7k
views
Re: GenesAnswers for Arabidopsis!
GeneAnswers annotation Arabidopsis GO
10.4 years ago lhuang7 ▴ 50
0
votes
2
replies
3.0k
views
which Agilent annotation db?
agilent annotation
10.4 years ago Frederico Moraes Ferreira ▴ 100
1
vote
2
replies
1.9k
views
GenesAnswers for Arabidopsis!
annotation
updated 10.4 years ago by ▴ 840 • written 10.4 years ago by • 0
0
votes
1
reply
1.2k
views
issue with mta10.r1.genecdf: eset results don't make sense
annotation
updated 10.4 years ago by 68k • written 10.4 years ago by • 0
0
votes
1
reply
1.3k
views
Empty annotation of DOT objects with readAmigoDot() (no annot or leaves)
ramigo annotation readAmigoDot getAmigoTree
10.4 years ago evepash • 0
0
votes
5
replies
6.0k
views
How to do Affy ST array analysis
Annotation Normalization hgu133a probe affy oligo Annotation Normalization hgu133a probe
updated 10.4 years ago by • 0 • written 11.5 years ago by ★ 13k
0
votes
0
replies
1.7k
views
News: Rebuilding annotation packages for Affymetrix Gene/Exon ST Arrays
affymetrix annotation microarray News
10.4 years ago James W. MacDonald 68k
2
votes
3
replies
2.0k
views
locateVariants with sample names
annotation variantannotation sample
10.5 years ago • updated 10.4 years ago by0 • 0
1
vote
1
reply
1.8k
views
Running cufflinks for spliceR
Annotation spliceR Annotation spliceR
updated 10.5 years ago by ▴ 120 • written 11.2 years ago by ▴ 20
0
votes
2
replies
2.3k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 10.5 years ago by ▴ 20 • written 11.8 years ago by ▴ 40
1
vote
2
replies
3.8k
views
Affy HTA 2.0 array analysis
Annotation affy Annotation affy
updated 10.5 years ago by ▴ 20 • written 12.2 years ago by ▴ 360
3
votes
18
replies
3.7k
views
Annotating codelink data file
r codelink annotation annotationdbi
updated 10.5 years ago by ▴ 760 • written 10.5 years ago by ▴ 260
1,978 results • Page 10 of 40
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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