Showing : annotation • reset
0
votes
0
replies
915
views
Trouble to load data with basicProfile
go software error annotation
10.6 years ago ncervea • 0
2
votes
5
replies
3.6k
views
miRNA expression analysis : annotation
miRNA annotation affymetrixchip
10.6 years ago aswathym ▴ 10
0
votes
3
replies
1.4k
views
Getting annotated and normalized data.
microarray rstudio annotation
updated 10.6 years ago by 68k • written 10.6 years ago by • 0
1
vote
15
replies
4.7k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 10.6 years ago by ▴ 150 • written 11.0 years ago by ★ 2.1k
0
votes
5
replies
2.2k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation pdinfobuilder
10.6 years ago alakatos ▴ 130
2
votes
15
replies
4.3k
views
Annotation of Affy Porcine Gene 1.0 ST array data
limma oligo annotation
updated 3 months ago by • 0 • written 10.9 years ago by • 0
0
votes
2
replies
2.4k
views
error in creating custom "org.MeSH.XXX.db" package with MeSHDbi
annotation annotationdbi rsqlite
10.6 years ago Ceca Bojic ▴ 10
0
votes
3
replies
2.8k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
10.6 years ago kanacska ▴ 10
0
votes
3
replies
3.1k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy pd.hugene.2.0.st hugene20 annotation microarray
10.6 years ago kanacska ▴ 10
4
votes
5
replies
1.8k
views
Analyzing gene expression data( not celfiles) in limma and annotating results
limma annotation
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ▴ 10
0
votes
1
reply
997
views
several gene names for a probeID in affymetrix annotation file
affy annotation
updated 10.7 years ago by 68k • written 10.7 years ago by • 0
0
votes
1
reply
2.0k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Problem with gene annotation used in chimera package for fusion analysis
chimera package fusion genes annotation
10.7 years ago richa_r • 0
2
votes
16
replies
5.0k
views
TxDb annotations for human chrM
GenomicFeatures TxDb.Hsapiens.UCSC.hg19.knownGene annotation
10.8 years ago Robert Castelo ★ 3.4k
2
votes
6
replies
3.1k
views
Questions about analysis of GeneChip Rat Gene 2.0 ST Array
microarray affy oligo annotation
10.8 years ago khosoda • 0
0
votes
5
replies
2.6k
views
Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
10.8 years ago oliver.tills • 0
0
votes
1
reply
2.3k
views
RDAVIDWebService Package - Uploading a gene list using data()
rdavidwebservice david differential gene expression annotation
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by • 0
0
votes
2
replies
1.8k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 10.8 years ago by 53k • written 17.6 years ago by ★ 1.1k
0
votes
1
reply
2.0k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 10.8 years ago by 53k • written 10.8 years ago by ▴ 150
1
vote
2
replies
1.6k
views
How to build a non "gene-centered" annotation package using SQLForge ?
annotation package custom microarray
10.8 years ago becker.jeremie • 0
0
votes
2
replies
1.7k
views
org.Hs.eg deprecation and txDb usage
org.hs.eg.db annotation
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by ▴ 10
1
vote
2
replies
2.4k
views
ChipPeakAnno:getAnnotation using UCSC instead of ensembl
annotation chippeakanno
updated 10.8 years ago by ★ 1.3k • written 10.8 years ago by • 0
6
votes
1
reply
3.5k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 10.8 years ago by ▴ 370 • written 11.9 years ago by ▴ 160
0
votes
0
replies
1.7k
views
how to build a new crlmm CDF annotation package?
crlmm annotation
10.8 years ago Aaron Mackey ▴ 200
2
votes
2
replies
1.9k
views
Custom CDF annotation question
microarray annotation normalization
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
0
votes
8
replies
4.1k
views
no significant differences in gene expression-limma
Annotation
updated 10.8 years ago by 53k • written 11.7 years ago by ▴ 180
1
vote
3
replies
9.0k
views
Annotating limma Results with Gene Names for Affy Microarrays
limma annotation pd.mogene.2.0.st mogene20sttranscriptcluster.db affy
updated 10.9 years ago by 53k • written 10.9 years ago by ▴ 130
0
votes
6
replies
1.7k
views
Getting CDS positioning for IlluminaHumanv4 annotations
illumina annotation
10.9 years ago Sylvain Foisy ▴ 80
2
votes
2
replies
1.7k
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 10.9 years ago by 68k • written 10.9 years ago by • 0
8
votes
4
replies
5.5k
views
how to extract "Gene type" from org.Mm.eg.db?
annotation org.Mm.eg.db
10.9 years ago Guido Hooiveld ★ 4.1k
0
votes
6
replies
2.7k
views
hyperGTest interpretation of 'under' and finding all Entrez associated with a GO term
Annotation GO gostats
updated 10.9 years ago by 53k • written 13.0 years ago by ▴ 70
2
votes
1
reply
2.6k
views
News: Changes to matchGenes in bumphunter
annotation bumphunter News
updated 10.9 years ago by 43k • written 10.9 years ago by ▴ 60
0
votes
2
replies
1.6k
views
How many arrays are "enough" for creating useful fRMA vectors?
annotation frma frmatools
updated 10.9 years ago by ▴ 830 • written 10.9 years ago by ★ 4.2k
2
votes
2
replies
2.6k
views
GO offspring consistency
annotation GO graph gene ontology
updated 10.9 years ago by 1.6k • written 10.9 years ago by • 0
0
votes
1
reply
1.8k
views
readVCF (VariantAnnotation) problem with mismatched header and info fields in vcf file
annotation vcf readvcf variantannotation
10.9 years ago jls2282 • 0
1
vote
3
replies
1.6k
views
Integating phenodata with PorGene 1.0 ST array
oligo annotation
updated 10.9 years ago by 68k • written 10.9 years ago by • 0
0
votes
2
replies
1.9k
views
ReportingTools problem with GO report
Annotation GO Annotation GO
updated 11.0 years ago by • 0 • written 11.6 years ago by ★ 1.5k
2
votes
2
replies
2.1k
views
Cannot retrieve Annotations for a GENEID from Homo.sapiens
annotation annotationdbi homo.sapiens
updated 11.0 years ago by 68k • written 11.0 years ago by ▴ 50
1
vote
2
replies
4.4k
views
Error attaching org.Hs.eg.db package
annotationdbi annotation organismdb loadnamespace
11.0 years ago milorobertsmith • 0
1
vote
3
replies
2.3k
views
GO.db package GOBPPARENTS
go annotation
updated 11.0 years ago by ★ 7.2k • written 11.0 years ago by ▴ 20
2
votes
6
replies
2.4k
views
bioconductor packages for importing custom annotation tables into R?
annotation importing
updated 11.0 years ago by 25k • written 11.0 years ago by ▴ 20
1
vote
1
reply
1.4k
views
Can subjunc use splice sites from a reference annotation (i.e. GTF file)?
Annotation Rsubread
updated 11.0 years ago by 53k • written 11.8 years ago by ★ 7.9k
2
votes
2
replies
1.7k
views
How to remove IEA genes from list of GO terms?
go annotation organismdb
updated 11.1 years ago by 68k • written 11.1 years ago by ★ 4.1k
6
votes
4
replies
1.6k
views
Missing KRAS in locateVariants or TxDb.Hsapiens.UCSC.hg19.knownGene?
software error annotation
updated 11.1 years ago by ★ 6.8k • written 11.1 years ago by ▴ 10
4
votes
3
replies
5.7k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO BLAST annotation
updated 11.1 years ago by ★ 7.2k • written 11.1 years ago by ▴ 270
0
votes
0
replies
1.7k
views
ENCODE integrated genomic annotation data access
annotation
11.1 years ago heyi xiao ▴ 360
3
votes
3
replies
6.4k
views
Annotation from Submitter GPL in GSE dataset
annotation geoquery
updated 11.1 years ago by 68k • written 11.1 years ago by ▴ 20
1
vote
3
replies
1.4k
views
id matching in select function within hugene10stprobeset.db
annotation affy annotationdbi
updated 11.1 years ago by 68k • written 11.1 years ago by • 0
1
vote
2
replies
1.5k
views
NA values in Biomart query
Annotation biomaRt
updated 11.1 years ago by ▴ 800 • written 11.2 years ago by ▴ 70
0
votes
2
replies
1.4k
views
RMA X prefix to Affymetrix annotations
microarray affy annotation
11.1 years ago robin073 • 0
1,978 results • Page 11 of 40
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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