Showing : annotation • reset
2
votes
3
replies
2.3k
views
combine different GSE on different GPL
annotation genesymbols meta analysis
9.6 years ago wahaha123 • 0
0
votes
2
replies
1.3k
views
Same or different tools: AnnotationHub and AnnotationDbi?
annotation
updated 9.6 years ago by 25k • written 9.6 years ago by • 0
0
votes
1
reply
1.7k
views
Importing and Extracting Annotation
annotation zebrafish probe
updated 9.6 years ago by 68k • written 9.6 years ago by • 0
4
votes
4
replies
2.5k
views
Why does Homo.sapiens import TxDb.Hsapiens.UCSC.hg19.knownGene instead of TxDb.Hsapiens.UCSC.hg38.knownGene?
homo.sapiens txdb annotation
updated 9.6 years ago by ★ 6.8k • written 9.6 years ago by ▴ 680
0
votes
0
replies
1.7k
views
Annotation, Over representation testing and Pathway analysis using Ensembl gene IDs
rnaseq annotation gostats org.Bt.eg.db
9.6 years ago mrodrigues.fernanda ▴ 10
0
votes
0
replies
2.0k
views
CRISPRseek compare2sequences .Method error - solved
crisprseek software error annotation
9.6 years ago ragan.pitner • 0
1
vote
1
reply
1.8k
views
Question about EAGenes (TCGAbiolinks)
annotation cancer biomart genetics R
updated 9.7 years ago by ▴ 260 • written 9.7 years ago by • 0
2
votes
9
replies
4.1k
views
GEOquery error
Annotation PROcess Annotation PROcess
updated 9.7 years ago by 6.7k • written 11.5 years ago by 68k
1
vote
1
reply
2.0k
views
Find Intron Length from Annotation File?
annotation arabidopsis thaliana Tutorial
updated 9.7 years ago by 25k • written 9.7 years ago by • 0
7
votes
0
replies
4.5k
views
Tutorial: New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation genomicranges visualization docker shiny Tutorial
9.7 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
replies
2.1k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation variantannotation rstudio
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by • 0
0
votes
2
replies
2.1k
views
mutational signatures problems
bsgenome readvcf tcga annotation somaticsignatures
updated 13 months ago by • 0 • written 9.7 years ago by • 0
0
votes
0
replies
1.3k
views
making a graph for gene enrichment analysis
annotation
9.7 years ago xlyan011 • 0
0
votes
0
replies
969
views
making a graph for gene enrichment analysis
annotation
9.7 years ago xlyan011 • 0
0
votes
0
replies
963
views
making a graph for gene enrichment analysis
annotation
9.7 years ago xlyan011 • 0
0
votes
0
replies
942
views
making a graph for gene enrichment analysis
annotation
9.7 years ago xlyan011 • 0
0
votes
5
replies
4.6k
views
How to import data to R
annotation
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by • 0
0
votes
0
replies
1.7k
views
count overlapping reads for CpG islands and annotate with gene names?
annotation chippeakanno rattus norvegicus medip-seq
9.7 years ago Vang Le ▴ 80
2
votes
4
replies
2.3k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 840
2
votes
12
replies
3.0k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation orgdb
9.8 years ago • updated 9.7 years ago knishida ▴ 20
0
votes
5
replies
2.1k
views
"oligo" package: probenames/probeinfo different from expr-set (read.cellfles): miRNA 4.0 (affy)
microarray probe annotation affy
9.8 years ago dietmar.pils • 0
2
votes
3
replies
2.4k
views
Why are there so many not annotated probes in the PorGene-1_1-st affymetrix array?
affymetrix microarrays pd.porgene.1.1.st annotation probe to gene id pathway analysis
updated 9.8 years ago by 68k • written 9.8 years ago by ▴ 60
3
votes
9
replies
3.1k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.8 years ago Konstantinos Yeles ▴ 90
2
votes
5
replies
2.6k
views
TxDb.Hsapiens.UCSC.hg19.knownGene Exons that are not part of any gene
TxDb.Hsapiens.UCSC.hg19.knownGene genomicfeatures annotation
9.8 years ago Aliaksei Holik ▴ 350
2
votes
4
replies
3.0k
views
chromosome name in summarizeOverlaps for RNASeq data
summarizeoverlaps RNAseq annotation counts
9.8 years ago bioprog • 0
0
votes
3
replies
2.6k
views
Connection error using biomaRt
biomart annotation
updated 4 months ago by • 0 • written 9.8 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Gene Ontolology and Annotation
Gene Ontolology Annotation GO.db org.Sc.sgd.db org.Hs.eg.db
updated 9.8 years ago by ▴ 760 • written 9.8 years ago by • 0
4
votes
9
replies
3.6k
views
Common workflow to build an microarray annatation package, like hgu133a.db
annotation
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
0
votes
1
reply
851
views
Modify column names of big data frame
annotation
updated 9.9 years ago by ▴ 370 • written 9.9 years ago by ▴ 10
0
votes
8
replies
1.8k
views
Get ID Mapping right
annotation getsymbol
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
1
vote
6
replies
4.4k
views
failed to load 'AnnotationHub' resource
annotationhub annotation error
9.9 years ago elhananby ▴ 10
0
votes
0
replies
1.6k
views
Empty temporary GPL6244.annot.gz file
annotation
9.9 years ago abhinandan.lip • 0
1
vote
2
replies
4.2k
views
Converting annotation from UCSC to Ensembl
ensembl ucsc annotation
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 110
0
votes
4
replies
2.0k
views
missing gene_ids in org.Mm.egENSEMBL
org.mm.eg.db annotation
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 30
1
vote
2
replies
1.7k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
1
vote
4
replies
2.0k
views
AGI code in gcrma normalization output
gcrma software error annotation
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 40
1
vote
5
replies
2.2k
views
HuGene2.0 array annotation
annotation oligo pd.hugene.2.0.st
10.0 years ago sylvia ▴ 10
3
votes
1
reply
5.0k
views
Best way to convert ensembl id to mgi?
annotation biomart
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 90
0
votes
2
replies
2.0k
views
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation annotationforge
updated 10.0 years ago by 25k • written 10.0 years ago by • 0
0
votes
7
replies
2.9k
views
makeTxDbFromGFF yields an empty TxDb
annotation maketxdbfromgff genomicfeatures
10.0 years ago José Luis Lavín ▴ 10
2
votes
10
replies
4.5k
views
Extract three types of intergenic regions
granges views annotation iranges
updated 10.0 years ago by ★ 1.7k • written 10.1 years ago by ▴ 50
3
votes
6
replies
3.2k
views
Assign genes to CpG islands
annotation genomicranges bsgenome
updated 10.0 years ago by ★ 1.3k • written 10.0 years ago by ▴ 10
2
votes
8
replies
3.4k
views
illuminaHumanv4.db : annotation source, and mapping to transcript names
microarray annotation illumina human ht-12 v4
10.1 years ago VSM ▴ 120
3
votes
4
replies
1.6k
views
Errors in makeOrgPackage
annotation error
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 20
0
votes
4
replies
3.1k
views
Illumina Sentrix HumanRef-8 Expression BeadChip annotation file
illumina annotation
updated 10.1 years ago by ★ 6.6k • written 10.1 years ago by ▴ 10
0
votes
1
reply
2.3k
views
Mouse Transcriptome Assay 1.0 processing and annotation
annotation MTA10 array processing
updated 10.1 years ago by ▴ 40 • written 10.6 years ago by ▴ 130
1
vote
2
replies
1.9k
views
parsing a vcf file using VariantAnnotation
annotation
updated 10.1 years ago by ★ 6.8k • written 10.1 years ago by • 0
0
votes
0
replies
1.2k
views
No genes' ID in peak annotations during ChiP-Seq with ChIPpeakAnno R package
chippeakanno chipseq annotation
10.1 years ago MarcinKosiński • 0
0
votes
0
replies
1.5k
views
News: IPI numbers in annotation packages
annotation proteomics uniprot.ws News
10.1 years ago James W. MacDonald 68k
0
votes
2
replies
2.1k
views
Annotation for a MoGene-2_0-st Chip/Arry Data
microarray affymetrix mouse gene arrays annotation pd.mogene.2.0.st
10.1 years ago Michaela.Fuchs • 0
1,978 results • Page 9 of 40
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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