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gene
•
reset
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2
gene
columns
output
updated 8.5 years ago by
Michael Love
42k • written 8.5 years ago by
amyfm
▴ 10
0
votes
2
replies
3.8k
views
Gene body coverage plot
plot
gene
GenomicRanges
Coverage
R
updated 2.1 years ago by
kent.riemondy
▴ 20 • written 2.2 years ago by
svenbioinf
• 0
0
votes
2
replies
3.6k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer
gene
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
venkatarao142152
• 0
3
votes
2
replies
3.5k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray
omim
gene
disorder
updated 9.1 years ago by
Kamil Slowikowski
▴ 30 • written 9.1 years ago by
pankajnarula84
▴ 20
6
votes
7
replies
2.2k
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 2.5 years ago by
James W. MacDonald
66k • written 2.5 years ago by
Caitlin
▴ 50
6
votes
2
replies
2.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation
entrez
gene
ids
software error
updated 5.1 years ago by
Gordon Smyth
50k • written 5.1 years ago by
Raito92
▴ 60
5
votes
5
replies
1.9k
views
threeUTRsByTranscript per GENE
GenomicFeatures
Transcript
gene
threeUTRsByTranscript
updated 3.3 years ago by
Dario Strbenac
★ 1.5k • written 4.7 years ago by
amgtech
▴ 10
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 3.5 years ago by
Ram
▴ 210 • written 3.6 years ago by
sijing.gsj
• 0
0
votes
2
replies
1.6k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86
gene
2.2 years ago
beslinail
• 0
9
votes
10
replies
1.5k
views
Mapping of GENE symbols into ENTREZ
limma
annotation
Gene
4.7 years ago • updated 4.3 years ago
omarrafiqued
▴ 50
2
votes
5
replies
1.3k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2
gene
format
4.8 years ago
miriam.mueller
• 0
3
votes
3
replies
1.2k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 4.9 years ago by
James W. MacDonald
66k • written 4.9 years ago by
t.bergmann
• 0
1
vote
4
replies
1.1k
views
gene Isoforms quantification using RNA-seq data
gene
isoform
quantification
rna-seq
updated 4.7 years ago by
swbarnes2
★ 1.4k • written 4.7 years ago by
angel.campos
• 0
0
votes
3
replies
1.0k
views
PureCN gene LOH very common, amp/del not
PureCN
gene
amplification
deletion
loh
updated 4.0 years ago by
markus.riester
▴ 130 • written 4.0 years ago by
twtoal
▴ 10
0
votes
2
replies
1.0k
views
I want to use global test.
gene
r
clst
rpy
globaltest
3.1 years ago
Kim
• 0
0
votes
4
replies
1.0k
views
Fonction of genes/metabolites in a pathway?
gene
metabolite
functionnal annotation
pathways
updated 4.2 years ago by
Kevin Blighe
★ 3.9k • written 4.2 years ago by
emisecherre
• 0
2
votes
4
replies
975
views
Joint pathway Analysis using both gene and metabolite data sets
data integration
gene
metabolite
4.2 years ago
emisecherre
• 0
0
votes
1
reply
839
views
WGCNA - Network construction and module detection
gene
Clustering
wgcna
flashclust
updated 20 months ago by
andres.firrincieli
▴ 50 • written 21 months ago by
Recep
▴ 20
1
vote
4
replies
836
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
19 months ago
faiza
• 0
1
vote
2
replies
741
views
gene ontologies for a set of genes
gene
ontology
2.8 years ago
Bogdan
▴ 670
0
votes
0
replies
641
views
TFutils database
TFutils
mouse
gene
convert
3.0 years ago
nicocillari
• 0
0
votes
2
replies
579
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene
chromosome
proteincodinggene
13 months ago
Liliian
• 0
3
votes
2
replies
552
views
please resolve the issue
gene
ExpressionData
updated 14 months ago by
James W. MacDonald
66k • written 14 months ago by
sonal
• 0
0
votes
0
replies
540
views
Gene expression changes in one condition
RNASeq
Gene
ExpressionData
2.5 years ago
AZ
▴ 30
0
votes
0
replies
470
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene
enrichment
topGO
GO
retrieve
13 months ago
Priya
• 0
0
votes
1
reply
314
views
gene aligning reference
geneRecommender
gene
updated 6 months ago by
James W. MacDonald
66k • written 6 months ago by
Gülsüm
• 0
26 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
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