Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ggbio
•
reset
18
votes
4
replies
1.6k
views
`ggbio` package can't be loaded
ggbio
3.3 years ago
Batool
▴ 370
12
votes
7
replies
4.4k
views
Plot ggplot2 and ggbio Images Together
ggplot2
ggbio
cowplot
updated 4.8 years ago by
Assa Yeroslaviz
★ 1.5k • written 8.9 years ago by
andrew.j.skelton73
▴ 370
7
votes
9
replies
2.9k
views
Install ggbio development version
ggbio
development
package installation
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
zx8754
▴ 10
4
votes
3
replies
2.5k
views
ggbio error: Objects of type OrganismDb not supported by autoplot
GO
OrganismDb
ggbio
GO
OrganismDb
ggbio
updated 9.4 years ago by
dalloliogm
▴ 50 • written 9.7 years ago by
Georg Otto
▴ 120
3
votes
2
replies
1.7k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
8.2 years ago
Mario Saare
▴ 20
2
votes
7
replies
2.1k
views
ggbio, RnBeads and 3.2.2
ggbio
rnbeads
rversion3.2.2
8.4 years ago
areyoujokingme
• 0
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 8.3 years ago by
aaron
▴ 10 • written 8.3 years ago by
timothypyork
• 0
2
votes
1
reply
2.1k
views
ggbio: examples of overlaying multiple assay datasets
ggbio
visualization
ggbio
updated 9.6 years ago by
Panagiotis Moulos
▴ 30 • written 9.6 years ago by
Abhishek Pratap
▴ 190
2
votes
2
replies
964
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio
ggplot2
5.6 years ago
Lescai, Francesco
▴ 380
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio
SNP
granges
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Marcin Grzybowski
• 0
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio
ggplot2
call
plot
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
oswaldo.lorenzo
▴ 10
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio
ggplot2
tracks
genomics
plot
7.7 years ago
oswaldo.lorenzo
▴ 10
2
votes
5
replies
3.3k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
6.9 years ago
Bogdan
▴ 670
1
vote
1
reply
1.6k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio
ggplot2
genomics
plot
7.6 years ago
oswaldo.lorenzo
▴ 10
1
vote
5
replies
949
views
how can I add a label for granges using the geom_rect ?
ggbio
17 months ago
潘晓光
• 0
1
vote
1
reply
1.0k
views
Bug in ggbio's geom_alignment when using facet
ggbio
facet
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.3 years ago by
kristoffer.vittingseerup
▴ 20
1
vote
2
replies
1.6k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio
ggplot2
5.4 years ago
t.fadason
▴ 10
1
vote
3
replies
2.8k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2
ggbio
plot
tracks
bioconductor
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
oswaldo.lorenzo
▴ 10
1
vote
1
reply
1.2k
views
Problems with parsing of geom_alignment()'s type column (from ggbio)
ggbio
geom_alignment
updated 9.1 years ago by
Michael Lawrence
★ 11k • written 9.3 years ago by
kristoffer.vittingseerup
▴ 20
1
vote
3
replies
1.6k
views
ggbio - change transcript label sizes
ggbio
annotation
updated 2.0 years ago by
chrisclarkson100
▴ 50 • written 4.7 years ago by
Kevin Blighe
★ 3.9k
1
vote
1
reply
1.2k
views
Add main title to ggbio's karyogram
ggbio
karyogram
granges
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
TimothéeFlutre
▴ 80
1
vote
3
replies
1.4k
views
circular display in ggbio
ggbio
8.8 years ago
Bogdan
▴ 670
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 7.2 years ago by
maximilianh
▴ 10 • written 7.2 years ago by
metamaden
▴ 10
1
vote
4
replies
2.4k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio
ggplot2
autoplot
bioconductor
gene models
updated 8.3 years ago by
snf
▴ 10 • written 8.3 years ago by
danhovelson
▴ 10
1
vote
11
replies
4.7k
views
Error when install ggbio
ggbio
biocinstaller
updated 8.3 years ago by
Livia Rasp
• 0 • written 8.4 years ago by
syrttgump
▴ 20
1
vote
3
replies
2.0k
views
Loading alternative genomes into ggbio
ggbio
8.6 years ago
daniel.antony.pass
• 0
1
vote
1
reply
1.0k
views
ggbio labels with ggrepeal on circos plot
ggbio
r
graphics
5.6 years ago
franceschini.gianmarco
• 0
0
votes
1
reply
1.0k
views
Changing the x axis size using tracks (ggbio)
ggbio
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
3
replies
2.0k
views
trouble installing affycoretools for R 3.0
VariantAnnotation
GO
BSgenome
affycoretools
BSgenome
VariantAnnotation
ggbio
GO
BSgenome
updated 11.1 years ago by
James W. MacDonald
65k • written 11.1 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
1.3k
views
Error with autoplot of transcriptDB object
ggbio
9.7 years ago
Mark Dunning
★ 1.1k
0
votes
0
replies
1.3k
views
autoplot() in ggbio package for txdb object
ggbio
ggbio
9.7 years ago
Tengfei Yin
▴ 490
0
votes
3
replies
1.4k
views
help with visualizing structural variation data
ggbio
ggbio
11.3 years ago
Abhishek Pratap
▴ 410
0
votes
1
reply
1.0k
views
status of visnab
Visualization
ggbio
Gviz
Visualization
ggbio
Gviz
updated 11.0 years ago by
Tengfei Yin
▴ 420 • written 11.0 years ago by
Abhishek Pratap
▴ 410
0
votes
1
reply
1.5k
views
Positional Details with Features through UniProt.ws Ultimately to display as tracks in ggbio
annotate
ggbio
annotate
ggbio
updated 9.7 years ago by
Tengfei Yin
▴ 490 • written 9.7 years ago by
Anne Deslattes Mays
▴ 30
0
votes
6
replies
1.4k
views
pileupAsGRanges depth limit
Sequencing
ggbio
Sequencing
ggbio
updated 11.4 years ago by
Martin Morgan
25k • written 11.4 years ago by
Mark Dunning
★ 1.1k
0
votes
1
reply
1.9k
views
plotIdeogram for non-human or mouse genome
ideogram
ggbio
ideogram
ggbio
updated 9.7 years ago by
Tengfei Yin
▴ 490 • written 9.7 years ago by
Mark Dunning
★ 1.1k
0
votes
0
replies
1.2k
views
autoplot() in ggbio package for txdb object
ggbio
ggbio
9.8 years ago
sun
▴ 100
0
votes
4
replies
3.4k
views
How to combine VCF-class and data.frame with annotations
GO
annotate
convert
ggbio
GO
annotate
convert
ggbio
written 11.7 years ago by
Stefan Dentro
▴ 70
0
votes
1
reply
1.3k
views
FW: Overlay Gene Expression on SNP (copy number) data
SNP
Coverage
Network
Cancer
TranscriptDb
IRanges
RCytoscape
ggbio
Gviz
SNP
Coverage
updated 12.0 years ago by
Tim Triche
★ 4.2k • written 12.0 years ago by
Ekta Jain
▴ 370
0
votes
4
replies
1.9k
views
GGally ggbio conflict/bug
ggbio
ggbio
updated 10.5 years ago by
Michael Lawrence
★ 11k • written 10.5 years ago by
Paulson, Ariel
▴ 10
0
votes
2
replies
1.0k
views
color-coded arch intensity in ggbio
ggbio
ggbio
updated 10.0 years ago by
Tengfei Yin
▴ 420 • written 10.0 years ago by
Bogdan
▴ 670
0
votes
0
replies
982
views
ggbio circular plot rectangle colours - possible bug
ggbio
9.1 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
5
replies
1.4k
views
Graphing coverage() results
ggbio
genomicalignments
bam
9.2 years ago
gen
▴ 30
0
votes
1
reply
1.2k
views
tracks() and plotIdeogram() with non desired results in ggbio 1.10.9
TranscriptDb
ideogram
ggbio
TranscriptDb
ideogram
ggbio
updated 10.4 years ago by
Leonardo Collado Torres
★ 1.0k • written 10.4 years ago by
Tengfei Yin
▴ 490
0
votes
2
replies
1.0k
views
about tracks() in ggbio
ggbio
9.0 years ago
Bogdan
▴ 670
0
votes
1
reply
1.0k
views
visualization of interactions
ggbio
ggbio
updated 11.7 years ago by
Tengfei Yin
▴ 420 • written 11.7 years ago by
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r
ggbio
ggplot2
dnaseq
genomicranges
updated 8.8 years ago by
arfranco
▴ 130 • written 8.8 years ago by
fathniz
• 0
0
votes
0
replies
1.8k
views
ggbio circular plot y axis scale
ggbio
9.2 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
5
replies
1.7k
views
circular display in ggbio for gene tracks
ggbio
8.8 years ago
Bogdan
▴ 670
0
votes
0
replies
907
views
ggbio circle "scale.unit"
ggbio
9.2 years ago
rwness
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards
• All
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.9k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Locations
• All
WEHI, Melbourne, Australia,
13 minutes ago
Sweden,
15 minutes ago
United Kingdom,
18 minutes ago
Italy,
18 minutes ago
France,
23 minutes ago
Traffic: 731 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6