Showing : ggbio • reset
1
vote
11
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4.7k
views
Error when install ggbio
ggbio biocinstaller
updated 8.3 years ago by • 0 • written 8.4 years ago by ▴ 20
0
votes
9
replies
2.5k
views
ggbio: error when updating to current release version
BiocInstaller ggbio BiocInstaller ggbio
updated 12.1 years ago by 6.7k • written 12.1 years ago by ▴ 80
0
votes
9
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2.9k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts Rsubread ggbio
updated 5.5 years ago by ★ 3.6k • written 5.5 years ago by ▴ 40
7
votes
9
replies
3.0k
views
Install ggbio development version
ggbio development package installation
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
12
votes
7
replies
4.4k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 4.8 years ago by ★ 1.5k • written 8.9 years ago by ▴ 370
2
votes
7
replies
2.1k
views
ggbio, RnBeads and 3.2.2
ggbio rnbeads rversion3.2.2
8.4 years ago areyoujokingme • 0
0
votes
7
replies
1.2k
views
Uniform window size for different genes
ggbio
2.3 years ago rbenel ▴ 40
0
votes
6
replies
1.4k
views
pileupAsGRanges depth limit
Sequencing ggbio Sequencing ggbio
updated 11.4 years ago by 25k • written 11.4 years ago by ★ 1.1k
0
votes
6
replies
2.4k
views
Error while attempting to forge BSgenome data package
bsgenome ggbio
updated 4.5 years ago by • 0 • written 9.6 years ago by • 0
0
votes
5
replies
1.8k
views
circular display in ggbio for gene tracks
ggbio
8.8 years ago Bogdan ▴ 670
0
votes
5
replies
1.4k
views
Graphing coverage() results
ggbio genomicalignments bam
9.2 years ago gen ▴ 30
1
vote
5
replies
961
views
how can I add a label for granges using the geom_rect ?
ggbio
18 months ago • updated 17 months ago 潘晓光 • 0
2
votes
5
replies
3.3k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
6.9 years ago Bogdan ▴ 670
0
votes
5
replies
1.7k
views
Visualization of alignments with mismatch bases
SNP Coverage Alignment Visualization ggbio SNP Coverage Alignment Visualization ggbio
updated 11.2 years ago by ▴ 420 • written 11.2 years ago by ★ 11k
0
votes
5
replies
1.3k
views
ggbio and R-2.14.0
ggbio ggbio
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 30
1
vote
4
replies
2.4k
views
Cannot get ggbio autoplot to run successfully on R 3.2 (3.2.2 or 3.2.3)
ggbio ggplot2 autoplot bioconductor gene models
updated 8.3 years ago by ▴ 10 • written 8.4 years ago by ▴ 10
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ucsctrack ggbio Gviz hg19
updated 7.2 years ago by ▴ 10 • written 7.2 years ago by ▴ 10
0
votes
4
replies
1.9k
views
GGally ggbio conflict/bug
ggbio ggbio
updated 10.5 years ago by ★ 11k • written 10.5 years ago by ▴ 10
18
votes
4
replies
1.7k
views
`ggbio` package can't be loaded
ggbio
3.4 years ago Batool ▴ 370
0
votes
4
replies
3.4k
views
How to combine VCF-class and data.frame with annotations
GO annotate convert ggbio GO annotate convert ggbio
written 11.7 years ago by ▴ 70
0
votes
4
replies
1.2k
views
autoplot transcriptDb error with some regions
TranscriptDb ggbio TranscriptDb ggbio
updated 10.6 years ago by ▴ 490 • written 10.6 years ago by ★ 1.9k
0
votes
4
replies
1.7k
views
about GenomicRanges keepseqlevel deprecation and ggbio
GenomicRanges ggbio GenomicRanges ggbio
updated 10.9 years ago by ★ 11k • written 10.9 years ago by ▴ 90
0
votes
4
replies
1.5k
views
Measuring shifts in intronic expression independently of exons
GO DESeq DEXSeq ggbio GO DESeq DEXSeq ggbio
10.7 years ago • updated 10.6 years ago James Perkins ▴ 60
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 7.4 years ago by ★ 11k • written 7.4 years ago by ▴ 10
0
votes
3
replies
2.0k
views
trouble installing affycoretools for R 3.0
VariantAnnotation GO BSgenome affycoretools BSgenome VariantAnnotation ggbio GO BSgenome
updated 11.1 years ago by 65k • written 11.1 years ago by ★ 2.0k
0
votes
3
replies
1.5k
views
help with visualizing structural variation data
ggbio ggbio
11.4 years ago Abhishek Pratap ▴ 410
4
votes
3
replies
2.5k
views
ggbio error: Objects of type OrganismDb not supported by autoplot
GO OrganismDb ggbio GO OrganismDb ggbio
updated 9.4 years ago by ▴ 50 • written 9.7 years ago by ▴ 120
1
vote
3
replies
1.4k
views
circular display in ggbio
ggbio
8.8 years ago Bogdan ▴ 670
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio autoplot color vignette
updated 8.3 years ago by ▴ 10 • written 8.3 years ago by • 0
1
vote
3
replies
2.9k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
0
votes
3
replies
1.7k
views
Trouble Downloading "ggbio"
ggbio R
8.4 years ago ebkenn07 • 0
2
votes
3
replies
2.4k
views
ggbio circular plot
ggbio SNP granges
updated 8.4 years ago by ★ 11k • written 8.4 years ago by • 0
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.7 years ago oswaldo.lorenzo ▴ 10
0
votes
3
replies
1.5k
views
ggbio: integrate different plots
ggbio
updated 7.4 years ago by ★ 11k • written 7.4 years ago by • 0
1
vote
3
replies
2.0k
views
Loading alternative genomes into ggbio
ggbio
8.7 years ago daniel.antony.pass • 0
1
vote
3
replies
1.6k
views
ggbio - change transcript label sizes
ggbio annotation
updated 2.1 years ago by ▴ 50 • written 4.7 years ago by ★ 3.9k
0
votes
3
replies
1.3k
views
Plots with transparent background in ggbio.
ggbio ggbio
updated 10.6 years ago by ▴ 490 • written 10.6 years ago by ★ 13k
0
votes
2
replies
919
views
visualization of chromatin interaction networks
gviz ggbio karyotypeR
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 670
2
votes
2
replies
982
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
5.7 years ago Lescai, Francesco ▴ 380
0
votes
2
replies
1.6k
views
Cytoband information for rice
rice cytoband circlize ggbio ideogram
6.9 years ago • updated 6.8 years ago Didi ▴ 10
1
vote
2
replies
1.6k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
5.5 years ago t.fadason ▴ 10
0
votes
2
replies
1.0k
views
about tracks() in ggbio
ggbio
9.1 years ago • updated 9.0 years ago Bogdan ▴ 670
0
votes
2
replies
1.1k
views
color-coded arch intensity in ggbio
ggbio ggbio
updated 10.0 years ago by ▴ 420 • written 10.0 years ago by ▴ 670
0
votes
2
replies
1.4k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio ggplot2 title typography
7.7 years ago • updated 7.4 years ago oswaldo.lorenzo ▴ 10
0
votes
2
replies
1.2k
views
ggbio tracks with labelled: problem when I add a main title
Cancer ggbio Cancer ggbio
10.5 years ago Janet Young ▴ 740
0
votes
2
replies
1.2k
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio tracks
updated 7.7 years ago by ▴ 10 • written 7.7 years ago by ▴ 20
0
votes
2
replies
1.8k
views
Bioconductor Digest, Vol 138, Issue 27
annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase
updated 9.7 years ago by ▴ 490 • written 9.7 years ago by 1.6k
0
votes
2
replies
1.7k
views
autoplot transcriptDb error with some regions
TranscriptDb biovizBase ggbio TranscriptDb biovizBase ggbio
updated 10.5 years ago by ▴ 490 • written 10.5 years ago by ★ 1.6k
0
votes
2
replies
1.6k
views
x-axis ticks are misaligned in ggbio tracks
ggbio bugs tracks autoplot
9.3 years ago cooketho • 0
0
votes
2
replies
1.4k
views
"for loop" and AUTOPLOT function
ggbio granges
9.5 years ago Bogdan ▴ 670
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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