Showing : install • reset
1
vote
20
replies
3.6k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 18 months ago by 65k • written 18 months ago by • 0
5
votes
18
replies
7.5k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.3 years ago by • 0
4
votes
9
replies
1.8k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 3.5 years ago by ▴ 750 • written 3.5 years ago by • 0
0
votes
7
replies
1.6k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
7
replies
3.0k
views
BiocInstaller wants version of R that is not available yet
bioconductor error biocinstaller package installation install
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
8
votes
7
replies
1.8k
views
RMySQL availiability with Bioconductor 3.0
Install RMySQL Windows
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 30
1
vote
7
replies
1.4k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 17 months ago by 3.9k • written 17 months ago by • 0
0
votes
6
replies
2.6k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite gcc install fedora
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 20
0
votes
6
replies
1.7k
views
Illumina Methylation Manifest Install
Install biocinstaller package installation
6.0 years ago julieumn • 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.1k • written 17 months ago by • 0
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite install
8.4 years ago louiseapps2 • 0
0
votes
5
replies
2.0k
views
Flowclust install probelms on Ubuntu
flowclust ubuntu install error
9.0 years ago • updated 8.9 years ago gareth.howell • 0
2
votes
5
replies
928
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 5 months ago by 41k • written 5 months ago by • 0
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
votes
5
replies
1.3k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install VariantAnnotation Bioconductor chromVAR
updated 2.7 years ago by 6.7k • written 2.7 years ago by • 0
0
votes
5
replies
2.1k
views
Error installing VariantAnnotation with bioconductor/devel_core
install variantannotation
9.2 years ago kforner • 0
0
votes
5
replies
3.8k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller installation install source conda
updated 7.7 years ago by 25k • written 7.7 years ago by ▴ 40
3
votes
5
replies
10k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
2.2 years ago czan ▴ 10
1
vote
5
replies
3.6k
views
Can't Download DESeq2 Package (Ubuntu 20.04; R 4.0.1; BioConductor 3.11)
deseq2 install r4.0 bioconductor3.11 ubuntu20.04
3.9 years ago ruwaa.ibrahem • 0
4
votes
5
replies
1.4k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2 install software error
3.8 years ago mja18 ▴ 40
0
votes
4
replies
1.3k
views
GO.db package can't be installed
install GO.db
updated 3.3 years ago by 25k • written 3.3 years ago by • 0
5
votes
4
replies
2.7k
views
XVector installation fails because zlib.h is not found
XVector docker Install
2.5 years ago • updated 2.4 years ago RobKo ▴ 10
2
votes
4
replies
2.7k
views
BiocManager::install() does not work anymore
Install PackageType
updated 2.6 years ago by 3.9k • written 2.6 years ago by • 0
1
vote
4
replies
1.6k
views
Failing to install DEP package. Some strange error.
R Bioconductor Install DEP
3.2 years ago tpm • 0
0
votes
4
replies
2.2k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install packages Mus.musculus
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
1
vote
4
replies
6.1k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 12 months ago by • 0 • written 2.2 years ago by • 0
2
votes
4
replies
2.1k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 17 months ago by • 0
0
votes
4
replies
338
views
DNABarcodes-Installation Issue
DNABarcodes Install
3 months ago nk130 • 0
1
vote
3
replies
1.2k
views
Bioconductor installation error
Install
updated 2.0 years ago by • 0 • written 2.0 years ago by ▴ 10
1
vote
3
replies
6.6k
views
problem in installing Bio conductor package
bioconductorpackages Install
updated 10 weeks ago by • 0 • written 3.5 years ago by • 0
0
votes
3
replies
1.7k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 2.5 years ago by ▴ 10 • written 2.6 years ago by • 0
0
votes
3
replies
1.3k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
1
vote
3
replies
5.4k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 16 months ago by 3.9k • written 17 months ago by • 0
1
vote
3
replies
1.0k
views
I can't upgrade to version 3.15 in R
Install
updated 19 months ago by 50k • written 19 months ago by • 0
0
votes
3
replies
1.9k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 2.2 years ago by • 0 • written 2.3 years ago by • 0
4
votes
2
replies
4.1k
views
Install package without updating dependent package
Install AnnotationForge
2.4 years ago 亮 • 0
0
votes
2
replies
1.4k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
2.6 years ago • updated 2.5 years ago ladypurrsia ▴ 10
0
votes
2
replies
1.5k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck Install martini
3.4 years ago Hector • 0
0
votes
2
replies
586
views
msa Installation failed - please help
Install msa
11 months ago Ido • 0
2
votes
2
replies
995
views
rtracklayer S.h
install
24 months ago • updated 23 months ago gibran • 0
3
votes
2
replies
5.6k
views
problem installing "vsn" on debian... gcc: error: unrecognized command line option -fstack-protector-strong
install vsn gcc debian
9.2 years ago regcl • 0
7
votes
2
replies
4.4k
views
Help in installing certain pacakges
software error install
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 40
0
votes
2
replies
982
views
Error when installing pcaExplorer
install GenomeInfoDbData
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
1
vote
2
replies
822
views
How to install R package from GitHub
Install github
updated 2.2 years ago by 3.9k • written 2.2 years ago by • 0
0
votes
2
replies
2.7k
views
non-zero exit status when trying to install a package
Install
24 months ago BioC123 • 0
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by ▴ 10
2
votes
2
replies
1.4k
views
BiomaRT URLs down? 404 Not Found
biomart bioconductor support.bioconductor.org biocinstaller install
6.3 years ago n.pantelireis16 • 0
0
votes
2
replies
1.9k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 2.1 years ago by 3.9k • written 2.1 years ago by ▴ 30
0
votes
2
replies
1.3k
views
Installation problems
Install
updated 2.0 years ago by 3.9k • written 2.0 years ago by • 0
3
votes
2
replies
6.7k
views
errors when installing cummeRbund package
Install cummerbund Rcurl xml
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 20
50 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
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Comment: Too many significant genes when integrating gtex and tcga
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