Showing : methylationArrayAnalysis • reset
0
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2
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150
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 6 days ago by 68k • written 6 days ago by • 0
0
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2
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289
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
4 weeks ago a.alkema • 0
0
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1
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178
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 6 weeks ago by 68k • written 6 weeks ago by • 0
0
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13
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1.3k
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When doing differential methylation using the sesame package, seems to only go one way
methylation sesame methylationArrayAnalysis
updated 5 months ago by ▴ 20 • written 5 months ago by ▴ 10
1
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2
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706
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In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
5 months ago ramiro.barrantes ▴ 10
0
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1
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421
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 6 months ago by 68k • written 6 months ago by ▴ 10
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1
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649
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ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 3 months ago by • 0 • written 8 months ago by • 0
0
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7
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1.7k
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
10 months ago hortense96 • 0
1
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1
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1.3k
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 12 months ago by 68k • written 12 months ago by • 0
1
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4
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1.2k
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
13 months ago mikat • 0
2
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4
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1.4k
views
Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 15 months ago by 52k • written 15 months ago by • 0
3
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6
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1.3k
views
Methylation data analysis
MethylationArrayData methylationArrayAnalysis
16 months ago aldea85 • 0
0
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1
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1.2k
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 17 months ago by 68k • written 17 months ago by • 0
1
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3
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1.0k
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 18 months ago by 68k • written 19 months ago by • 0
0
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1
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3.8k
views
Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 19 months ago by ★ 4.7k • written 19 months ago by ▴ 10
1
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2
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932
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edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
20 months ago Krzysztof • 0
1
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2
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1.1k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
21 months ago Irene • 0
1
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1
reply
858
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 22 months ago by ▴ 40 • written 22 months ago by • 0
2
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6
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1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 22 months ago by ▴ 230 • written 22 months ago by • 0
0
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2
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1.5k
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Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
22 months ago arisarkar88 ▴ 40
0
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1
reply
846
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 23 months ago by 52k • written 23 months ago by • 0
0
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1
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919
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specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 24 months ago by 68k • written 2.0 years ago by • 0
5
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1
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2.0k
views
Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 14 months ago by • 0 • written 2.0 years ago by ▴ 80
0
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4
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1.6k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
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5
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1.9k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.0 years ago by • 0
0
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1
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897
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Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 2.3 years ago by ★ 2.0k
0
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3
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4.0k
views
Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 19 months ago by • 0 • written 2.4 years ago by • 0
0
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7
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3.4k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.4 years ago by 68k • written 2.8 years ago by • 0
0
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0
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961
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.0 years ago Jitendra ▴ 10
0
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0
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1.2k
views
getsex function error.
QualityControl methylationArrayAnalysis
3.1 years ago zusman • 0
2
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4
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1.7k
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How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
3.1 years ago Jojo • 0
0
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6
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4.2k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.7 years ago FWNL15 • 0
0
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2
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1.2k
views
Limma experiment design and making contrasts
limma methylationArrayAnalysis
3.9 years ago Kesava • 0
1
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8
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1.8k
views
EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
3.9 years ago chay • 0
0
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2
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1.7k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
3.9 years ago arisarkar88 ▴ 40
0
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2
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1.1k
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
4.1 years ago sissialva21 • 0
2
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7
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3.3k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 17 months ago by • 0 • written 4.2 years ago by ▴ 20
1
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1
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1.5k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
38 results • Page 1 of 1
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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0
I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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