Showing : methylationArrayAnalysis • reset
0
votes
1
reply
776
views
Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl)
methylationArrayAnalysis MethylationArrayData
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
0
replies
266
views
Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
9 months ago user_bioinfo • 0
0
votes
2
replies
751
views
Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 10 months ago by 68k • written 10 months ago by • 0
0
votes
2
replies
588
views
Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
11 months ago a.alkema • 0
0
votes
1
reply
403
views
Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 11 months ago by 68k • written 11 months ago by • 0
0
votes
13
replies
2.3k
views
When doing differential methylation using the sesame package, seems to only go one way
methylation sesame methylationArrayAnalysis
updated 16 months ago by ▴ 20 • written 16 months ago by ▴ 10
1
vote
2
replies
1.2k
views
In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
16 months ago ramiro.barrantes ▴ 10
0
votes
1
reply
732
views
Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 16 months ago by 68k • written 16 months ago by ▴ 10
0
votes
1
reply
972
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 13 months ago by • 0 • written 18 months ago by • 0
0
votes
7
replies
2.5k
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
21 months ago • updated 20 months ago hortense96 • 0
1
vote
1
reply
1.7k
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 22 months ago by 68k • written 22 months ago by • 0
1
vote
4
replies
1.7k
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
23 months ago mikat • 0
2
votes
4
replies
1.8k
views
Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 2.1 years ago by 53k • written 2.1 years ago by • 0
3
votes
6
replies
1.7k
views
Methylation data analysis
MethylationArrayData methylationArrayAnalysis
2.2 years ago aldea85 • 0
0
votes
1
reply
1.4k
views
EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
1
vote
3
replies
1.3k
views
Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
0
votes
1
reply
4.0k
views
Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by ▴ 20
1
vote
2
replies
1.1k
views
edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
2.5 years ago Krzysztof • 0
1
vote
2
replies
1.5k
views
How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
2.6 years ago Irene • 0
1
vote
1
reply
1.1k
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
2
votes
6
replies
2.0k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 2.7 years ago by ▴ 230 • written 2.7 years ago by • 0
0
votes
2
replies
1.8k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
2.7 years ago arisarkar88 ▴ 40
0
votes
1
reply
1.1k
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.8 years ago by 53k • written 2.8 years ago by • 0
0
votes
1
reply
1.1k
views
specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
5
votes
2
replies
2.6k
views
Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 5 months ago by • 0 • written 2.8 years ago by ▴ 80
0
votes
4
replies
2.0k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
5
replies
2.3k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.9 years ago by • 0
0
votes
1
reply
1.1k
views
Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 3.1 years ago by ★ 2.0k
0
votes
3
replies
4.7k
views
Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 2.5 years ago by • 0 • written 3.2 years ago by • 0
0
votes
7
replies
3.9k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 3.2 years ago by 68k • written 3.7 years ago by • 0
0
votes
0
replies
1.1k
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.8 years ago Jitendra ▴ 10
0
votes
0
replies
1.4k
views
getsex function error.
QualityControl methylationArrayAnalysis
3.9 years ago zusman • 0
2
votes
4
replies
2.0k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
3.9 years ago Jojo • 0
0
votes
6
replies
4.9k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
4.5 years ago FWNL15 • 0
0
votes
2
replies
1.4k
views
Limma experiment design and making contrasts
limma methylationArrayAnalysis
4.8 years ago Kesava • 0
1
vote
8
replies
2.2k
views
EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
4.8 years ago chay • 0
0
votes
2
replies
2.0k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
4.8 years ago arisarkar88 ▴ 40
0
votes
2
replies
1.4k
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
4.9 years ago sissialva21 • 0
2
votes
7
replies
3.9k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 2.3 years ago by • 0 • written 5.1 years ago by ▴ 20
1
vote
1
reply
1.8k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
40 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Popular Question to Hervé Pagès 16k
Teacher to Michael Love 43k
Locations • All
United Kingdom, 58 minutes ago
United States, 1 hour ago
United Kingdom, 1 hour ago
Barcelona, Spain, 1 hour ago
The city by the bay, 2 hours ago
Traffic: 1034 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6