Showing : methylationArrayAnalysis • reset
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Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl)
methylationArrayAnalysis MethylationArrayData
updated 11 months ago by 68k • written 11 months ago by • 0
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
11 months ago user_bioinfo • 0
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2
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874
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 11 months ago by 68k • written 11 months ago by • 0
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676
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
12 months ago a.alkema • 0
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457
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 13 months ago by 68k • written 13 months ago by • 0
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2.5k
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When doing differential methylation using the sesame package, seems to only go one way
methylation sesame methylationArrayAnalysis
updated 17 months ago by ▴ 20 • written 17 months ago by ▴ 10
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In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
17 months ago ramiro.barrantes ▴ 10
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776
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 17 months ago by 68k • written 17 months ago by ▴ 10
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1.0k
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ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 15 months ago by • 0 • written 19 months ago by • 0
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2.7k
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
22 months ago hortense96 • 0
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1.9k
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
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4
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1.8k
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
2.1 years ago • updated 2.0 years ago mikat • 0
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2.0k
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Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 2.2 years ago by 53k • written 2.2 years ago by • 0
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6
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1.7k
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
2.3 years ago aldea85 • 0
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1.5k
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
1
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3
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1.5k
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
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1
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4.1k
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Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by ▴ 20
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2
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1.2k
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edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
2.6 years ago Krzysztof • 0
1
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2
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1.7k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
2.7 years ago Irene • 0
1
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1
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1.1k
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 2.8 years ago by ▴ 40 • written 2.8 years ago by • 0
2
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6
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2.1k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 2.8 years ago by ▴ 230 • written 2.8 years ago by • 0
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2
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1.9k
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Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
2.8 years ago arisarkar88 ▴ 40
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1
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1.1k
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.9 years ago by 53k • written 2.9 years ago by • 0
0
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1
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1.2k
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specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
5
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2
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2.8k
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Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 7 months ago by • 0 • written 3.0 years ago by ▴ 80
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4
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2.1k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
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5
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2.4k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 3.0 years ago by • 0
0
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1
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1.2k
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Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 3.2 years ago by ★ 2.0k
0
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3
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4.8k
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Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 2.6 years ago by • 0 • written 3.3 years ago by • 0
0
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7
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4.1k
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ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 3.3 years ago by 68k • written 3.8 years ago by • 0
0
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1.2k
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.9 years ago Jitendra ▴ 10
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0
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1.4k
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getsex function error.
QualityControl methylationArrayAnalysis
4.0 years ago zusman • 0
2
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4
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2.1k
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How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
4.1 years ago Jojo • 0
0
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6
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5.0k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
4.6 years ago FWNL15 • 0
0
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2
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1.4k
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Limma experiment design and making contrasts
limma methylationArrayAnalysis
4.9 years ago Kesava • 0
1
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8
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2.3k
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EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
4.9 years ago chay • 0
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2
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2.0k
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champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
4.9 years ago arisarkar88 ▴ 40
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2
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1.4k
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Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
5.1 years ago sissialva21 • 0
2
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7
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4.2k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 2.4 years ago by • 0 • written 5.2 years ago by ▴ 20
1
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1
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1.9k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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