Showing : methylationArrayAnalysis • reset
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Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl)
methylationArrayAnalysis MethylationArrayData
updated 4 weeks ago by 68k • written 4 weeks ago by • 0
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
4 weeks ago user_bioinfo • 0
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2
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281
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 8 weeks ago by 68k • written 8 weeks ago by • 0
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2
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348
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
11 weeks ago a.alkema • 0
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224
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 3 months ago by 68k • written 3 months ago by • 0
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1.6k
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When doing differential methylation using the sesame package, seems to only go one way
methylation sesame methylationArrayAnalysis
updated 7 months ago by ▴ 20 • written 7 months ago by ▴ 10
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In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
7 months ago ramiro.barrantes ▴ 10
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494
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 7 months ago by 68k • written 7 months ago by ▴ 10
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718
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ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 5 months ago by • 0 • written 9 months ago by • 0
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7
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2.0k
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
12 months ago hortense96 • 0
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1.4k
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 14 months ago by 68k • written 14 months ago by • 0
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4
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1.3k
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
14 months ago mikat • 0
2
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4
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1.5k
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Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 16 months ago by 52k • written 16 months ago by • 0
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6
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1.4k
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
17 months ago aldea85 • 0
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1.2k
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 19 months ago by 68k • written 19 months ago by • 0
1
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3
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1.1k
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 20 months ago by 68k • written 20 months ago by • 0
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1
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3.8k
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Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 21 months ago by ★ 4.8k • written 21 months ago by ▴ 20
1
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2
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965
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edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
22 months ago Krzysztof • 0
1
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2
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1.2k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
23 months ago • updated 22 months ago Irene • 0
1
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1
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888
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 24 months ago by ▴ 40 • written 24 months ago by • 0
2
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6
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1.7k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 2.0 years ago by ▴ 230 • written 2.0 years ago by • 0
0
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2
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1.6k
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Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
2.0 years ago • updated 24 months ago arisarkar88 ▴ 40
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1
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903
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.1 years ago by 52k • written 2.1 years ago by • 0
0
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958
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specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
5
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1
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2.1k
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Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 15 months ago by • 0 • written 2.1 years ago by ▴ 80
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4
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1.7k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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5
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2.0k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.2 years ago by • 0
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1
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928
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Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 2.4 years ago by ★ 2.0k
0
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3
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4.2k
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Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 21 months ago by • 0 • written 2.5 years ago by • 0
0
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7
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3.5k
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ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.5 years ago by 68k • written 3.0 years ago by • 0
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0
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983
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.1 years ago Jitendra ▴ 10
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0
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1.3k
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getsex function error.
QualityControl methylationArrayAnalysis
3.2 years ago zusman • 0
2
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4
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1.7k
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How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
3.2 years ago Jojo • 0
0
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6
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4.4k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.8 years ago FWNL15 • 0
0
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2
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1.2k
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Limma experiment design and making contrasts
limma methylationArrayAnalysis
4.1 years ago Kesava • 0
1
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8
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1.9k
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EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
4.1 years ago chay • 0
0
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2
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1.7k
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champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
4.1 years ago arisarkar88 ▴ 40
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2
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1.2k
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Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
4.2 years ago sissialva21 • 0
2
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7
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3.4k
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Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 18 months ago by • 0 • written 4.4 years ago by ▴ 20
1
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1
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1.5k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
40 results • Page 1 of 1
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Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq by caroline.zanchi • 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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