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minfi
•
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1
vote
33
replies
4.0k
views
minfi failed positions in EPIC array
minfi
illuminahumanmethylationepicanno.ilmn10b.hg19
7.8 years ago
Giovanni Calice
▴ 160
3
votes
15
replies
6.4k
views
support for EPIC methylation arrays in minfi
minfi
updated 7.7 years ago by
line.heylen
▴ 10 • written 8.1 years ago by
Kasper Daniel Hansen
★ 6.5k
3
votes
15
replies
4.4k
views
Installing MethylationEPIC minifest and annotation
minfi
methylation
illuminahumanmethylationepicmanifest
illumina
8.1 years ago
rasii
• 0
0
votes
14
replies
1.9k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 3 months ago by
nguyen
• 0 • written 8 months ago by
Deepa
• 0
0
votes
12
replies
2.9k
views
bumphunter DMRs difficulties
PROcess
minfi
bumphunter
PROcess
minfi
bumphunter
updated 10.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.2 years ago by
Giovanni Calice
▴ 160
2
votes
11
replies
9.2k
views
Minfi error in reading Basename column
methylation
minfi
updated 7.6 years ago by
SplittingInfinity
▴ 60 • written 8.7 years ago by
parap
• 0
0
votes
11
replies
3.7k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate
minfi
updated 3 months ago by
Tim Peters
▴ 170 • written 7.1 years ago by
Jenny Drnevich
★ 2.0k
0
votes
10
replies
2.2k
views
MethyLumiM to MethyLumiSet?
convert
lumi
methylumi
minfi
wateRmelon
convert
lumi
methylumi
minfi
wateRmelon
updated 10.5 years ago by
Tim Triche
★ 4.2k • written 10.5 years ago by
Martin Rijlaarsdam
▴ 190
4
votes
10
replies
4.4k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 8.2 years ago by
Peter Hickey
▴ 740 • written 8.2 years ago by
Ahdee
▴ 50
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi
lumi
methylumi
dmrcate
illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by
Tim Peters
▴ 170 • written 7.1 years ago by
poojitha.stemcell
▴ 10
0
votes
9
replies
3.1k
views
clarification about bumphunter value output
minfi
bumphunter
updated 11 months ago by
Jennifer Dehner
• 0 • written 6.2 years ago by
src3
• 0
1
vote
9
replies
2.7k
views
bumphunter beta values
methylation
minfi
bumphunter
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
igor
▴ 40
0
votes
9
replies
2.8k
views
Rhdf5lib installation problem
minfi
Rhdf5lib
updated 3.3 years ago by
Mike Smith
★ 6.5k • written 3.3 years ago by
Giovanni Calice
▴ 160
0
votes
8
replies
5.2k
views
Error using read.metharray.exp in minfi to read idat files
minfi
read.metharray.exp
idat
HM450k
6.5 years ago
poojitha.stemcell
▴ 10
1
vote
8
replies
3.3k
views
Normalization starting from beta values in minfi
methylation
minfi
written 7.9 years ago by
Asma rabe
▴ 290
2
votes
8
replies
4.0k
views
"minfi" loading problem because of couldn't "bumphunter" load
bumphunter
minfi
loading error
rtracklayer
updated 6.9 years ago by
nilan666
• 0 • written 7.0 years ago by
juan-pablo.cerapio-arroyo
▴ 10
1
vote
8
replies
1.4k
views
EPIC array single replicate pipeline?
minfi
methylationArrayAnalysis
3.1 years ago
chay
• 0
4
votes
8
replies
3.7k
views
minfi MethylationEPIC errors
minfi
methylation
IlluminaHumanMethylationEPICmanifest
IlluminaHumanMethylationEPICanno.ilmn10b.hg19
updated 8.1 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.1 years ago by
igor
▴ 40
1
vote
7
replies
3.3k
views
Loading beta values into minfi
minfi
450k
updated 8.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.5 years ago by
CC
▴ 10
0
votes
7
replies
1.4k
views
Minfi read.metharray error in checkslotassignment
minfi
read.metharray.exp
updated 5.8 years ago by
shubhamrock19998
• 0 • written 6.7 years ago by
lily
• 0
3
votes
7
replies
2.9k
views
estimateCellCounts Visualisations - Adjusting Beta Values for Plotting
minfi
limma
updated 8.2 years ago by
Smeeta Shrestha
▴ 20 • written 8.8 years ago by
andrew.j.skelton73
▴ 370
2
votes
7
replies
2.2k
views
preprocessNoob + preprocessQuantile Error handling preprocessMethod
minfi
updated 8.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.7 years ago by
andrew.j.skelton73
▴ 370
1
vote
7
replies
2.8k
views
dmpFinder return value (minfi)
minfi
dmpfinder
dmp
illuminahumanmethylationepicanno.ilmn10b.hg19
epic microarray
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
Biologist
▴ 110
0
votes
7
replies
3.0k
views
Is anyone able to explain the statistics behind the dmpFinder function in minfi package?
minfi
methylation
dmpfinder
limma
updated 7.0 years ago by
vulegom
• 0 • written 7.6 years ago by
mcall
▴ 20
0
votes
7
replies
2.2k
views
Use of minfi using (maverick3.2 and Developer) on Yosemite OS
version compatibility
minfi
9.1 years ago
morrisht
• 0
0
votes
7
replies
3.6k
views
Weird things happening with minfi and RcppEigen
PROcess
minfi
PROcess
minfi
updated 11.4 years ago by
Benilton Carvalho
★ 4.3k • written 11.4 years ago by
Gustavo Fernández Bayón
▴ 440
0
votes
7
replies
451
views
error in reading idat files and creating rgset
minfi
MethylationArray
updated 11 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
sharangiiv
• 0
0
votes
6
replies
2.1k
views
ChAMP filter removing good samples from different batch of EPIC arrays.
minfi
champ
updated 6.7 years ago by
Yuan Tian
▴ 90 • written 6.7 years ago by
sarka.vorackova
• 0
0
votes
6
replies
3.1k
views
difference in detection p-values from Minfi vs. GenomeStudio
minfi
genomestudio
methylation
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
brhead
▴ 40
1
vote
6
replies
1.9k
views
Combining .idat and GEO data sets in minfi
minfi
8.0 years ago
matts
• 0
3
votes
6
replies
1.7k
views
Minfi can't combineArrays
RGset
combinearrays
450k
minfi
updated 2.7 years ago by
James W. MacDonald
65k • written 2.7 years ago by
Sophie Marion de Proce
• 0
1
vote
6
replies
1.9k
views
minfi and lumi not available for version 3.3.2
minfi
lumi
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Jessie.Johnson
▴ 10
0
votes
6
replies
3.0k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Guest User
★ 13k
1
vote
6
replies
1.9k
views
Reading 450k data in minfi
450K
minfi
updated 5.2 years ago by
laurenz.holcik
• 0 • written 5.2 years ago by
lalchungnungabt17
• 0
2
votes
6
replies
1.9k
views
Bumphunting for longitudinal data
bumphunter
minfi
lmer
dmrcate
dmr analysis
updated 6.0 years ago by
Tim Peters
▴ 170 • written 6.0 years ago by
Ashlynn
• 0
0
votes
6
replies
1.5k
views
NaN values in beta/M values matrices of RGChannelSet are imputed during normalization?
minfiData
methylationArrayAnalysis
MethylationArrayData
minfi
updated 3.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 3.5 years ago by
omorante
• 0
2
votes
6
replies
1.4k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 4 weeks ago by
Tim Peters
▴ 170 • written 5 months ago by
rae.alshammari
▴ 10
3
votes
6
replies
2.1k
views
Complex Model Design with Bumphunter (Minfi)
minfi
bumphunter
model.matrix
linear model
updated 13 months ago by
edward.esiribloom
• 0 • written 8.8 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
4.1k
views
minfi - error when reading idat files
minfi
methylation
updated 19 months ago by
Sajad Wani
• 0 • written 6.8 years ago by
stewart999
▴ 10
0
votes
5
replies
914
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi
limma
6 months ago
dorota.komar
• 0
1
vote
5
replies
2.4k
views
Meaning of the value column in bumphunter output (minfi package)
minfi
bumphunter
updated 6.2 years ago by
src3
• 0 • written 7.0 years ago by
Antonio M.
• 0
4
votes
5
replies
5.9k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0
minfi
updated 6 months ago by
jay
• 0 • written 13 months ago by
luca.s
▴ 50
0
votes
5
replies
1.2k
views
minfi error read.metharray.exp
methylationArrayAnalysis
minfiData
minfi
MethylationArrayData
MethylationArray
written 14 months ago by
Grace
• 0
0
votes
5
replies
2.1k
views
DNA methylation analysis without raw data IDAT files
r
illimina 450k methylation
minfi
champ
tcga
updated 5.7 years ago by
Yuan Tian
▴ 280 • written 5.7 years ago by
Beginner
▴ 60
0
votes
5
replies
2.0k
views
Is it possible to convert Methylumi object into RGChannelSet
microarray
minfi
methylumi
illumina450k
7.5 years ago • updated 6.6 years ago
poojitha.stemcell
▴ 10
0
votes
5
replies
3.5k
views
doParallel with Bumphunter gives Error in mcfork()
minfi
bumphunter
minfi
bumphunter
updated 10.1 years ago by
Tim Triche
★ 4.2k • written 10.1 years ago by
Guest User
★ 13k
0
votes
5
replies
2.0k
views
Coercion lumi/minfi objects
lumi
minfi
lumi
minfi
updated 10.2 years ago by
Tim Triche
★ 4.2k • written 10.2 years ago by
Aileen Bahl
▴ 10
0
votes
5
replies
1.5k
views
minfi preprocessQuantile problem
minfi
updated 7.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 7.4 years ago by
frederic.fournier
• 0
0
votes
4
replies
2.4k
views
minfi - how to subset a GenomicMethylSet by chromosome/seqname
Microarray
Annotation
PROcess
minfi
Microarray
Annotation
PROcess
minfi
updated 11.3 years ago by
Tim Triche
★ 4.2k • written 11.3 years ago by
Toby Hughes
▴ 30
0
votes
4
replies
1.5k
views
error on loading ratioConvert() in minfi
convert
minfi
convert
minfi
updated 10.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.0 years ago by
Guest User
★ 13k
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