Showing : rnaseqGene • reset
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Interaction in Design Experimental
rnaseqGene
5 months ago Ferdinand David • 0
1
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4
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2.2k
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Heatmap of the Count Matrix
rnaseqGene
updated 8 weeks ago by • 0 • written 5 months ago by • 0
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1
reply
845
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Workflow to Analyse DNA Sequence specify gene expression in a fungus under stress
rnaseqGene
updated 5 months ago by 43k • written 5 months ago by • 0
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3
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871
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RNA-seq with DESeq2 shrinkage estimation
Regression DESeq2 rnaseqGene
updated 15 months ago by 68k • written 15 months ago by • 0
3
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6
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1.3k
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A question occur when using DESeq2 on a complex design
DESeq2 rnaseqGene RNASeq
written 15 months ago by • 0
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3
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915
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Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
15 months ago gallantk5 • 0
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0
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695
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Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
16 months ago JG13 • 0
2
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2
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857
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Control group between 2 batches have different expression in RNAseq data
BatchQC BatchEffect rnaseqGene Normalization
updated 17 months ago by ▴ 10 • written 17 months ago by • 0
1
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2
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806
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Deseq2
DESeq2 rnaseqGene
updated 17 months ago by ▴ 220 • written 17 months ago by • 0
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1
reply
706
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normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 18 months ago by ★ 5.0k • written 18 months ago by • 0
2
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7
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1.9k
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deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
18 months ago sajadahmad41454 • 0
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2
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854
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RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 20 months ago by 53k • written 20 months ago by • 0
3
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5
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1.7k
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DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 20 months ago by 43k • written 20 months ago by ▴ 10
2
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1
reply
741
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Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 21 months ago by 43k • written 21 months ago by ▴ 20
5
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6
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1.5k
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
21 months ago Shaimaa Gamal • 0
1
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4
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1.2k
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rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 2.0 years ago by 43k • written 2.0 years ago by ▴ 60
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2
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2.2k
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R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
1
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3
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1.5k
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Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 2.8 years ago by 43k • written 2.8 years ago by • 0
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3
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3.2k
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Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
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2
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1.5k
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toptable sort .by set
limma rnaseqGene
3.5 years ago snowmattin • 0
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1
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1.4k
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Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 3.8 years ago by ★ 5.0k • written 3.8 years ago by • 0
6
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10
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2.4k
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rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 20
4
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1
reply
3.1k
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mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 4.0 years ago by 43k • written 4.1 years ago by ▴ 10
2
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2
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1.3k
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Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
4.1 years ago • updated 2.5 years ago diangomaiga • 0
2
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2
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2.4k
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DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
4.4 years ago SUMIT • 0
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0
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1.1k
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display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
4.7 years ago Bogdan ▴ 670
1
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6
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2.0k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
4.8 years ago • updated 4.7 years ago Seaweed • 0
3
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3
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1.3k
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A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 40
1
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3
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1.2k
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typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by ★ 1.5k
0
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7
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3.8k
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Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
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2
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1.3k
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DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
6.7 years ago courtney.stairs • 0
1
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2
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1.6k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 6.8 years ago by 68k • written 6.8 years ago by ▴ 10
3
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5
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10k
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How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 6.8 years ago by ★ 1.4k • written 6.8 years ago by • 0
1
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3
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1.8k
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how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
6.9 years ago melkile26 • 0
2
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5
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2.2k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 7.6 years ago by 4.2k • written 7.6 years ago by • 0
0
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2
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1.8k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 7.7 years ago by ▴ 160 • written 7.7 years ago by • 0
0
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1
reply
2.1k
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can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 9.4 years ago by ★ 6.8k • written 9.4 years ago by ▴ 20
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4
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2.3k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 9.4 years ago by • 0 • written 9.5 years ago by • 0
2
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5
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3.6k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
9.6 years ago cirisarri95 • 0
0
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1
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2.4k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by • 0
0
votes
6
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4.6k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
10.1 years ago JunLVI ▴ 40
3
votes
2
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2.2k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
6
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8
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3.0k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 10.4 years ago by ★ 8.2k • written 10.4 years ago by • 0
0
votes
2
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3.7k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 10.5 years ago by 68k • written 10.5 years ago by • 0
0
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2
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6.7k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
10.6 years ago greg.mulhearn • 0
0
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3
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2.1k
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Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
10.6 years ago Cheng-Yuan Kao ▴ 100
0
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0
replies
1.5k
views
Minor error in the RNASeqGene workflow
rnaseqgene
10.7 years ago snf ▴ 10
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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