Showing : rnaseqGene • reset
0
votes
3
replies
651
views
RNA-seq with DESeq2 shrinkage estimation
Regression DESeq2 rnaseqGene
updated 8 months ago by 68k • written 8 months ago by • 0
3
votes
6
replies
1.0k
views
A question occur when using DESeq2 on a complex design
DESeq2 rnaseqGene RNASeq
written 9 months ago by • 0
0
votes
3
replies
729
views
Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
9 months ago gallantk5 • 0
0
votes
0
replies
520
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
10 months ago JG13 • 0
2
votes
2
replies
687
views
Control group between 2 batches have different expression in RNAseq data
BatchQC BatchEffect rnaseqGene Normalization
updated 10 months ago by ▴ 10 • written 11 months ago by • 0
1
vote
2
replies
620
views
Deseq2
DESeq2 rnaseqGene
updated 11 months ago by ▴ 220 • written 11 months ago by • 0
0
votes
1
reply
552
views
normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 11 months ago by ★ 4.8k • written 11 months ago by • 0
2
votes
7
replies
1.5k
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
11 months ago sajadahmad41454 • 0
0
votes
2
replies
683
views
RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 13 months ago by 52k • written 13 months ago by • 0
3
votes
5
replies
1.4k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 13 months ago by 43k • written 14 months ago by ▴ 10
2
votes
1
reply
562
views
Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 14 months ago by 43k • written 15 months ago by ▴ 20
5
votes
6
replies
1.2k
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
15 months ago Shaimaa Gamal • 0
1
vote
4
replies
951
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 17 months ago by 43k • written 17 months ago by ▴ 60
0
votes
2
replies
1.9k
views
R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 21 months ago by 43k • written 21 months ago by • 0
1
vote
3
replies
1.2k
views
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 2.3 years ago by 43k • written 2.3 years ago by • 0
0
votes
3
replies
2.8k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
1
vote
2
replies
1.3k
views
toptable sort .by set
limma rnaseqGene
3.0 years ago snowmattin • 0
0
votes
1
reply
1.2k
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 3.3 years ago by ★ 4.8k • written 3.3 years ago by • 0
6
votes
10
replies
2.0k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 3.5 years ago by 43k • written 3.5 years ago by ▴ 20
4
votes
1
reply
2.9k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 3.5 years ago by 43k • written 3.5 years ago by ▴ 10
2
votes
2
replies
1.1k
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
3.5 years ago • updated 23 months ago diangomaiga • 0
2
votes
2
replies
2.2k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
3.9 years ago SUMIT • 0
0
votes
0
replies
985
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
4.2 years ago Bogdan ▴ 670
1
vote
6
replies
1.8k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
4.2 years ago Seaweed • 0
3
votes
3
replies
1.2k
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 40
1
vote
3
replies
1.0k
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 5.3 years ago by 43k • written 5.3 years ago by ★ 1.5k
0
votes
7
replies
3.5k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
2
replies
1.2k
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
6.1 years ago courtney.stairs • 0
1
vote
2
replies
1.5k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 6.2 years ago by 68k • written 6.2 years ago by ▴ 10
3
votes
5
replies
9.6k
views
How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 6.2 years ago by ★ 1.4k • written 6.2 years ago by • 0
1
vote
3
replies
1.6k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
6.4 years ago • updated 6.3 years ago melkile26 • 0
2
votes
5
replies
2.0k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 7.0 years ago by 4.1k • written 7.0 years ago by • 0
0
votes
2
replies
1.6k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 7.1 years ago by ▴ 160 • written 7.1 years ago by • 0
0
votes
1
reply
2.0k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 8.9 years ago by ★ 6.8k • written 8.9 years ago by ▴ 20
0
votes
4
replies
2.2k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 8.9 years ago by • 0 • written 8.9 years ago by • 0
2
votes
5
replies
3.4k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
9.1 years ago cirisarri95 • 0
0
votes
1
reply
2.3k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 9.5 years ago by ★ 8.2k • written 9.5 years ago by • 0
0
votes
6
replies
4.4k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
9.5 years ago JunLVI ▴ 40
3
votes
2
replies
2.0k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
6
votes
8
replies
2.8k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by • 0
0
votes
2
replies
3.5k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 10.0 years ago by 68k • written 10.0 years ago by • 0
0
votes
2
replies
6.3k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
10.0 years ago greg.mulhearn • 0
0
votes
3
replies
2.0k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
10.1 years ago Cheng-Yuan Kao ▴ 100
0
votes
0
replies
1.5k
views
Minor error in the RNASeqGene workflow
rnaseqgene
10.2 years ago snf ▴ 10
44 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
Awards • All
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to etiennedanis • 0
Popular Question to javier.ruizramirez • 0
Autobiographer to Paul Harrison ▴ 100
Popular Question to mohammedtoufiq91 ▴ 10
Locations • All
The city by the bay, 1 minute ago
United States, 1 hour ago
UPF, Barcelona, Spain, 1 hour ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 2 hours ago
Traffic: 474 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6