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2.9k
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How to use bootRanges to bootstrap small RNA loci (nullranges package)
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SGSeq: moving toward diffex from SGSeq analysis
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Help with running egsea()
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DNAString: Standard checksum function?
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Method to find pathways different between 2 groups
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EGSEA usage with microarray data (with vooma)?
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Couldn't connect to server while using "pathways"
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package goseq seems to be not available on the latest version of R
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Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
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9 days ago • updated 2 days ago Ian D. ▴ 70
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
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error
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14 hours ago NATASHA • 0
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error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
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updated 3 days ago by 50k • written 5.6 years ago by ▴ 10
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Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
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1 day ago neilzhao ▴ 30
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need help with Diffbind multiple groups
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News: Nominations for Bioconductor Awards 2024! Deadline May 15
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7 weeks ago • updated 1 day ago shepherl 3.9k
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Treeio as.treedata function seq lenght error
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Error in termSig <= adjs.cutOff when using topGO ks + elim
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10 hours ago adendekk • 0
42 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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