0
votes
0
replies
1.4k
views
Counting reads in genes with summarizeOverlaps
genomicAlignments summarizeOverlaps
5.5 years ago dequattro.concetta ▴ 10
2
votes
3
replies
963
views
DESeq2 nested interaction and individual batch correction question
deseq2
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
0
votes
0
replies
979
views
makeBSseqData problem versions
software error
updated 5.5 years ago by 4.3k • written 5.5 years ago by • 0
3
votes
1
reply
1.6k
views
Obtain p-values for group * condition interaction using DESeq2?
DESeq2 interaction differential expression
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 180
0
votes
6
replies
8.5k
views
Issues installing DESeq2, installation path not writable, package: survival
deseq2 survival
updated 3.1 years ago by • 0 • written 5.5 years ago by • 0
0
votes
2
replies
1.2k
views
Goseq_analysis related help
goseq
5.5 years ago kumararya563 • 0
0
votes
0
replies
783
views
go seq related help, where I need to do mapping between go term and the protein -id
goseq
5.5 years ago kumararya563 • 0
2
votes
2
replies
3.1k
views
tximport counts versus TPM
tximport TPM
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 620
1
vote
1
reply
1.3k
views
log2 fold change
deseq2
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
0
votes
3
replies
2.2k
views
Can I use compareCluster function to compare genes upregulated in various clusters of cells?
clusterProfiler bioconductor
updated 5.5 years ago by 68k • written 5.5 years ago by ▴ 20
0
votes
3
replies
1.7k
views
News: New Package Submission Workflow Updates!
new packages submission bioconductor News
updated 4.5 years ago by • 0 • written 5.5 years ago by 4.3k
0
votes
2
replies
1.6k
views
Error: 'numMotifHits' is not an exported object from 'namespace:motifcounter'
motifcounter
updated 5.5 years ago by • 0 • written 5.5 years ago by • 0
6
votes
11
replies
12k
views
Cluster profiler - KEGG analysis
clusterprofiler
5.5 years ago sunnykevin97 • 0
5
votes
10
replies
3.5k
views
EdgeR full model vs. reduced model - p-value for covariate
EdgeR differential expression analysis covariates
updated 5.5 years ago by 53k • written 5.5 years ago by ▴ 60
1
vote
2
replies
659
views
Cannot install DeSeq on RStudio version 6.3.2
deseq2
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
2
votes
3
replies
1.9k
views
Annotation package generation for HTA-2_0 by pdInfoBuilder fails
microarray pdInfoBuilder oligo
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
4
votes
1
reply
9.6k
views
Warning message as converting gene Symbol to ENTREZID
go clusterprofiler
updated 5.5 years ago by 68k • written 5.5 years ago by ▴ 40
0
votes
2
replies
975
views
Using mixed-model in differential expression analysis for bulk RNAseq
deseq2
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
5
votes
7
replies
2.7k
views
tximeta - problem importing salmon files
tximeta deseq2
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
1
vote
9
replies
4.1k
views
Dotplots for differential gene expression data ?
clusterprofiler
5.5 years ago sunnykevin97 • 0
0
votes
1
reply
1.1k
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
5.5 years ago akhaira • 0
0
votes
1
reply
4.3k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq monocle
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
0
votes
1
reply
1.2k
views
stuck in "Finding nonparametric adjustments" with MethylMix package.
MethylMix
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
0
votes
2
replies
3.9k
views
cmdscale() error: NA values not allowed in 'd', ask for help.
cmdscale zinbwave scRNA-seq single cell sequencing RNA-seq
updated 5.5 years ago by ▴ 980 • written 5.6 years ago by ▴ 10
1
vote
5
replies
3.7k
views
Spearman correlation for RNA SEQ data
deseq2 rnaseq statistic
updated 5.5 years ago by ★ 3.4k • written 5.5 years ago by • 0
7
votes
6
replies
1.6k
views
Odd DESeq2 results - high significance in genes with too many zeros
deseq2 rna-seq
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
2
votes
2
replies
3.6k
views
DESeqDataSetFromTximport with and without offset
deseq2 tximport
5.5 years ago igor ▴ 50
0
votes
1
reply
956
views
RNA-seq Sample Size
RnaSeqSampleSize
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
0
votes
0
replies
2.0k
views
In serialize(data, node$con)
software error
5.5 years ago thomas.boegl • 0
1
vote
4
replies
2.4k
views
Question: org.Hs.eg.db can not be downloaded
software error
5.5 years ago liuzhizheng1996 • 0
0
votes
0
replies
812
views
Problems creating qPCRset from RT2 array data with HTqPCR package
HTqPCR
5.5 years ago Maximilian Fuchs • 0
4
votes
4
replies
1.3k
views
visualization problem with BioMM package
BioMM
5.5 years ago parra.sev ▴ 20
0
votes
0
replies
1.1k
views
clustering of scRNAseq gene expression at multiple time points
scRNA-seq time series
5.5 years ago Bogdan ▴ 670
0
votes
0
replies
1.0k
views
Error in data.frame(ASSIGN = "ASSIGN parameters", version = as.character(utils::packageVersion("ASSIGN")), : arguments imply differing number of …
software error assign
5.5 years ago yueli7 ▴ 20
0
votes
1
reply
934
views
Which Package Should I Use to Predict Model Output Using RNA Seq Data?
regression
updated 5.5 years ago by 53k • written 5.5 years ago by • 0
0
votes
2
replies
2.8k
views
Error in taxa_are_rows(x) : trying to get slot "taxa_are_rows" from an object (class "otu_table") that is not an S4 object
deseq2 phyloseq
5.5 years ago jaiber.solano.i • 0
0
votes
1
reply
1.5k
views
DESeq2 normalization single cell
deseq2
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 100
6
votes
2
replies
1.6k
views
tximport + edgeR not recommended?
tximport edgeR
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
2
votes
1
reply
1.4k
views
AnnotationHub errors when querying
annotation
updated 5.5 years ago by ★ 4.1k • written 5.5 years ago by ▴ 10
1
vote
5
replies
3.7k
views
Error: Input Files have different Amount of Reads
SubRead Align Subjunc
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
2
votes
6
replies
1.8k
views
Question: Method to get normalize allele specific read counts
edger normalization
updated 5.5 years ago by ★ 29k • written 5.5 years ago by • 0
1
vote
6
replies
6.5k
views
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
deseq2 rownames
updated 4.3 years ago by 43k • written 5.5 years ago by ▴ 10
0
votes
3
replies
2.2k
views
SummarizedExperiement extract assay with no name
deseq2
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 10
2
votes
8
replies
1.8k
views
Reason for NA in table after beta regression?
biseq beta regression
5.5 years ago akhaira • 0
1
vote
3
replies
1.1k
views
Mixed-up column names for getBM()?
annotation
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
0
votes
2
replies
769
views
Two data set: Control sample is one data set and Case is another data with Time-series
LIMMA
5.5 years ago yuvayuvi369 • 0
2
votes
2
replies
1.7k
views
Tximport missing values for group summarizing counts
tximport rat reference GTF salmon
5.5 years ago keremwai • 0
1
vote
1
reply
1.1k
views
Is transcript color accessible through ensembldb? (gold = in both HAVANA+ENSEMBL)
ensembldb
updated 5.5 years ago by ★ 2.1k • written 5.5 years ago by ▴ 160
2
votes
4
replies
2.2k
views
Obtaining Comments From VCF Header
VariantAnnotation VCFHeader
written 5.5 years ago by ★ 1.6k
0
votes
8
replies
1.3k
views
Deseq2 weird values for Log2FC and pvalue.
deseq2 rnaseq r
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
46,712 results • Page 160 of 935
Recent ...
Replies
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
Awards • All
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Popular Question to Hervé Pagès 16k
Teacher to Michael Love 43k
Locations • All
The city by the bay, 2 minutes ago
Singapore, 3 minutes ago
United States, 5 minutes ago
United States, 7 minutes ago
United Kingdom, 15 minutes ago
Traffic: 982 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6