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18 months ago sropri • 0
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Using both voom and removeBatchEffect, will they double adjust the data or is it the right way to perform this
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18 months ago sukeshinik5 ▴ 20
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updated 18 months ago by 68k • written 18 months ago by • 0
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498
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19 months ago • updated 18 months ago egbastakis • 0
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18 months ago • updated 12 months ago Chris ▴ 20
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18 months ago jiachengd • 0
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1
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1
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813
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DESeq2 - vst() - log2FC - no replicates
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updated 18 months ago by ★ 5.0k • written 18 months ago by • 0
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Epicv2 conversion fail
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18 months ago Alex • 0
1
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5
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DESeq2 ML Query
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updated 18 months ago by 43k • written 18 months ago by • 0
1
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3
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1.1k
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Test of Multiple Linear Combination on coefficients from Wald Test in Deseq2
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19 months ago • updated 17 months ago David W. H. • 0
0
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0
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19 months ago • updated 18 months ago Stefano Mangiola ▴ 40
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19 months ago • updated 18 months ago Stefano Mangiola ▴ 40
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0
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599
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19 months ago Tanvi • 0
0
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1
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768
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Significant genes in DESeq2 analysis
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updated 19 months ago by 68k • written 19 months ago by • 0
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3
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19 months ago Tanvi • 0
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841
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Otsu threshold segmentation using EBImage
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updated 19 months ago by 68k • written 19 months ago by • 0
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News: AnnotationHub and ExperimentHub Access Downtime
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19 months ago miriam.lloriansopena • 0
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19 months ago Mallory • 0
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updated 19 months ago by 43k • written 19 months ago by • 0
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19 months ago silvaesilva.da • 0
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In a 3 group DEG analysis with three batches, can I use 1 group in all three batches to correct for the batch effect?
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updated 19 months ago by 43k • written 19 months ago by • 0
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Design formula, numeric contrast, and lfcshrink in deseq2
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updated 19 months ago by 43k • written 19 months ago by ▴ 10
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BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
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19 months ago Reese • 0
2
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869
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DESeq2 returns results for group with just one replicate
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Limma model.matrix design with batch effect and different life stages proportion estimates
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updated 19 months ago by • 0 • written 19 months ago by • 0
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19 months ago devarti.mahakalkar • 0
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GESA with certain gene list returns no result with human genom, but many result with mouse genom.
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19 months ago sawa • 0
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19 months ago Rachael • 0
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936
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How can I get gseGO to return all GO terms tested?
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21 months ago • updated 19 months ago isaac.vock • 0
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Including infectivity information to RNA-Seq analysis
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updated 19 months ago by 68k • written 19 months ago by ▴ 50
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error loading collectTRI regulon
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19 months ago silvaesilva.da • 0
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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