0
votes
2
replies
1.2k
views
Bioconductor HTML docs seem to be broken
bioconductor
9.6 years ago igor ▴ 50
0
votes
1
reply
1.6k
views
help installing bioconductor workflows
workflows biocinstaller error
9.6 years ago rocknrollscience • 0
2
votes
1
reply
1.8k
views
RIPSeeker error Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append) : subscript contains NAs or out-of-bounds indices
ripseeker
9.9 years ago • updated 9.6 years ago xfwang ▴ 20
1
vote
5
replies
3.8k
views
Ensembl bacteria not accessible from biomaRt
biomart ensembl
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 20
2
votes
2
replies
4.1k
views
DESeq2 transformation to use for PCA plot
deseq2 pca rlog transformation variancestabilizingtransformation
9.6 years ago Shobana Sekar ▴ 20
0
votes
1
reply
1.3k
views
Ensembl version from non-vertebrate biomaRt
biomart ensembl
updated 9.6 years ago by ▴ 70 • written 9.6 years ago by ▴ 20
1
vote
4
replies
1.8k
views
How to change the font size of Y axis title of datatrack
GVIZ
updated 9.6 years ago by 68k • written 9.6 years ago by • 0
0
votes
0
replies
2.9k
views
Trouble with GO.db - installation of package GO.db had non-zero exit status
software error GO.db
9.6 years ago christin.berlin • 0
2
votes
11
replies
3.0k
views
RBGL installation error
rbgl
9.6 years ago Julian Gehring ★ 1.3k
0
votes
0
replies
1.0k
views
Error in TopologyGSA
topologyGSA dataframe
9.6 years ago saamar.rajput • 0
2
votes
4
replies
1.9k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 350
2
votes
10
replies
2.5k
views
Reorder exons on negative strand in GRanges list
genomicranges
updated 9.6 years ago by ★ 11k • written 9.6 years ago by ▴ 90
0
votes
0
replies
1.7k
views
ChAMP ComBat step error: Error in if (min(beta.c) == 0) { : missing value where TRUE/FALSE needed
ChAMP methylation illumina450k
9.6 years ago Daniel E. Weeks ▴ 30
0
votes
0
replies
1.2k
views
cell analysis- significance output perturbed in shiny environment
cellcode significance
9.6 years ago christopher.clarskon15 ▴ 20
0
votes
0
replies
1.3k
views
Lumi Control Data
lumi illumina microarray
9.6 years ago m.a.bentley • 0
3
votes
4
replies
4.1k
views
Can't make working link in roxygen2
roxygen2
updated 9.6 years ago by ★ 13k • written 9.6 years ago by ▴ 370
8
votes
4
replies
7.6k
views
Can't upgrade to Bioconductor 3.3?
bioconductor biocupgrade upgrade update bioclite
9.6 years ago enricoferrero ▴ 680
0
votes
0
replies
1.0k
views
Analysis of Various chemical compounds on Cytotoxity Cell lines
clustering normalization
9.6 years ago ramars • 0
1
vote
3
replies
2.5k
views
DESeq2 size factors estimation after RSEM quantification
deseq2 tximport rsem estimatesizefactors
9.7 years ago • updated 9.6 years ago Hugo Varet ▴ 80
0
votes
2
replies
1.6k
views
Error in processAmplicons "hairpin sequence length not with specified length"
processamplicons
updated 9.6 years ago by ▴ 1000 • written 9.7 years ago by • 0
1
vote
6
replies
3.1k
views
different results between Rsamtools::pileup and samtools depth
rsamtools pileup
9.7 years ago TimothéeFlutre ▴ 80
0
votes
5
replies
866
views
multifactor edgeR logFC
edger
9.7 years ago tminning • 0
0
votes
1
reply
1.4k
views
flowCore: specify polygon coordinates
polygon gate flowcore flowviz
updated 9.7 years ago by 4.2k • written 9.7 years ago by • 0
1
vote
2
replies
1.6k
views
DEXSeq. Error: could not find function "DEXSeqDataSetFromHTSeq"
dexseq
9.7 years ago peter.thorpe • 0
2
votes
3
replies
1.8k
views
Can we use Entrez IDs for GOSeq?
goseq entrez gene identifiers
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
0
votes
1
reply
1.4k
views
rsbml: can not link to SUNDIALS
rsbml
9.7 years ago ivo • 0
1
vote
1
reply
2.3k
views
CellMix compare results to CellCODE
cellmix cellcode
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ▴ 20
6
votes
10
replies
3.3k
views
overlapsAny for elements in GRangesList
granges grangeslist overlapsAny
updated 20 months ago by • 0 • written 9.7 years ago by ▴ 180
1
vote
1
reply
1.4k
views
DESeqDataSet creation error
deseq2
updated 9.7 years ago by 43k • written 9.7 years ago by ▴ 70
1
vote
2
replies
1.7k
views
Workflows in BioC 3.3
workflows workflowinstall 3.3
9.7 years ago Axel Klenk ★ 1.1k
1
vote
3
replies
3.3k
views
DESeq normalization seems to reverse the directionality of log2FoldChange - is this normal?
deseq2 rnaseq rna-seq normalization cpm
updated 9.7 years ago by ★ 13k • written 9.7 years ago by • 0
1
vote
8
replies
2.4k
views
Understanding the design matrix
deseq2 design and contrast matrix
updated 9.7 years ago by 43k • written 9.7 years ago by ▴ 30
2
votes
4
replies
2.5k
views
Getting gene ID's from camera results
limma camera
updated 9.7 years ago by ▴ 150 • written 9.7 years ago by ▴ 110
3
votes
14
replies
5.1k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina
updated 9.7 years ago by ▴ 890 • written 9.7 years ago by • 0
1
vote
5
replies
16k
views
Limma LogFC hand calculation
limma logfc
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
2
votes
8
replies
2.4k
views
Regarding Somatic Mutation Signature
somaticsignatures
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by ▴ 10
4
votes
7
replies
2.7k
views
Understanding the output of the exprs() function
affymetrix microarrays
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
2
votes
2
replies
3.0k
views
Error during installation of ChemmineOB R package
Chemmine Ubuntu OpenBabel
updated 9.7 years ago by ★ 1.7k • written 9.7 years ago by ▴ 10
1
vote
4
replies
1.6k
views
rtrackylayer import bedpe error
rtracklayer
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 200
2
votes
1
reply
1.4k
views
How does csaw handle multiply aligned reads?
csaw chip-seq
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 40
1
vote
2
replies
2.2k
views
how to convert emsembl identiers with ENTERz ID in a logfoldchange files generated by DESeq2 to be used for SPIA
runspia deseq2 ENTerz
updated 9.7 years ago by 43k • written 9.7 years ago by • 0
4
votes
9
replies
3.3k
views
LIMMA gives different logFC
limma LogFC
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
0
votes
5
replies
2.3k
views
Install SomaticSignatures (ERROR: compilation failed for package 'RBGL')
somaticsignatures RGBL
9.7 years ago user31888 ▴ 30
1
vote
4
replies
1.8k
views
Error with wavClusteR annotateClusters function
wavcluster
updated 9.7 years ago by ▴ 100 • written 9.7 years ago by ▴ 10
0
votes
1
reply
1.9k
views
DEXSeq and shrinkage diagnostic : Comparison between results in plotDispEsts( dxd )
dexseq estimatedispersions
updated 9.7 years ago by ★ 13k • written 9.7 years ago by • 0
0
votes
1
reply
1.6k
views
interpreting dispersion estimation in dexseq
deseq2 dexseq estimatedispersions
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ★ 1.5k
2
votes
4
replies
2.3k
views
supportedUCSCtables(genome="hg38"): Is ensGene track really available?
genomicfeatures
updated 9.7 years ago by 16k • written 9.7 years ago by ▴ 40
4
votes
10
replies
1.8k
views
Extremely Big Number of Differences from Multi-level Design in RNA-seq Analysis by both Limma and DESeq2 - Something wrong with the design?
limma deseq2
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 10
1
vote
7
replies
26k
views
getting error with DEseq2
deseq2
9.7 years ago Nemo ▴ 80
0
votes
1
reply
994
views
genome searching with Biostrings and the BSgenome data packages
biostrings
updated 9.7 years ago by 25k • written 9.7 years ago by • 0
46,703 results • Page 396 of 935
Recent ...
Replies
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Guitar R package requires update due to dependency GenomicFeatures by Frank • 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Votes
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
Answer: Limma-voom sample weights and impact on DEG numbers
Awards • All
Teacher to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Locations • All
Finland, 5 minutes ago
United States, 23 minutes ago
United States, 2 hours ago
The city by the bay, 3 hours ago
Barcelona, Spain, 5 hours ago
Traffic: 1624 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6