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Votes
3
votes
5
replies
1.5k
views
IRanges start bigger than end
iranges
9.9 years ago
vedran.franke
• 0
0
votes
1
reply
2.4k
views
Multifactorial design in DESeq2 - how to answer biological questions
deseq2
multifactorial design
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
magdalena.z
• 0
0
votes
0
replies
1.5k
views
fillPeaks not calculating "intb" values.
xcms
metabolomics
9.9 years ago
Johannes Rainer
★ 2.1k
0
votes
3
replies
1.4k
views
EdgeR: retrieve Log-Likelihood from glmFit
edger
bic
mode selection
9.9 years ago
cedric.gobet
• 0
4
votes
2
replies
3.9k
views
limma-voom for miRNA seq
limma
voom
updated 9.9 years ago by
Gordon Smyth
53k • written 9.9 years ago by
Jake
▴ 90
1
vote
1
reply
1.4k
views
limma complex design
limma
voom
updated 9.9 years ago by
Gordon Smyth
53k • written 9.9 years ago by
ea1402
▴ 20
4
votes
5
replies
3.4k
views
Removing unwanted variation (RUV) for paired analysis ?
ruvseq
edger
ruvg
removebatcheffect
updated 9.9 years ago by
Aaron Lun
★ 29k • written 9.9 years ago by
g.atla
▴ 10
1
vote
2
replies
5.5k
views
WGCNA distance measures, clustering with TOM based on adjacency matrix type = "distance" versus correlation
wgcna
microarray
clustering
updated 9.9 years ago by
Peter Langfelder
★ 3.0k • written 9.9 years ago by
krr
• 0
0
votes
0
replies
1.3k
views
Regarding DEXseq input file
dexseq
9.9 years ago
thellambure_hettige
• 0
0
votes
1
reply
1.5k
views
code in supplementary 2 of DESeq
deseq
updated 9.9 years ago by
Wolfgang Huber
★ 13k • written 9.9 years ago by
Yuan Jian
▴ 250
2
votes
2
replies
1.1k
views
Cannot install NuChart
NuChart
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
Dimitris Polychronopoulos
▴ 80
1
vote
2
replies
2.4k
views
read-count normalization and mRNA degradation in Deseq2 and EdgeR
deseq2
edger
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
assaf www
▴ 140
0
votes
2
replies
2.7k
views
failure to install Homo.sapiens
package installation
9.9 years ago
david.cherba
• 0
0
votes
2
replies
6.1k
views
WGCNA - problems picking a suitable power
WGCNA
pickSoftThreshold
power
RNA-Seq
updated 9.9 years ago by
Peter Langfelder
★ 3.0k • written 9.9 years ago by
mrodrigues.fernanda
▴ 10
0
votes
1
reply
1.5k
views
nsFilter not filtering out all of the normgene->exon.
genefilter
affymetrix microarrays
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
hakimelakhrass
• 0
1
vote
1
reply
1.6k
views
Error in intI when plotting igraph graph.
bug
netbiov
9.9 years ago
sakan1000
▴ 10
0
votes
2
replies
2.0k
views
Question about the function "summarizeOverlaps"
genomicalignments
summarizeoverlaps
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
myf3748
• 0
2
votes
3
replies
1.4k
views
Export post-regressed counts with DESeq2
deseq2
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
pchiang5
• 0
0
votes
1
reply
3.0k
views
DESeq2: method plotDispEsts
deseq2
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
voyager.85
• 0
4
votes
3
replies
8.2k
views
deseq2 warning for the design formula
deseq2
design
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.2k
views
Unsupervised analysis problems
pheatmap
unsupervised
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
jarod_v6@libero.it
▴ 40
0
votes
1
reply
1.1k
views
Rsamtools error Installation
rsamtools
9.9 years ago
mohit
• 0
0
votes
5
replies
1.4k
views
annotation
Microarray
Microarray
updated 9.9 years ago by
jagata113
• 0 • written 15.4 years ago by
Marcelo Brandão
▴ 110
0
votes
2
replies
1.6k
views
DEXSeq on time series - how to set up models
DEXSeq
timecourse
rna-seq
differential exon usage
updated 9.9 years ago by
Alejandro Reyes
★ 1.9k • written 9.9 years ago by
MedwayC
• 0
0
votes
1
reply
1.9k
views
read.flowSet error Error: vector::_M_range_check
software error
read.flowset()
read.fcs
flowcore
flowcytometry
9.9 years ago
e.bestion
• 0
1
vote
8
replies
1.5k
views
The same statistical test for all multi omic features
limma
microarray
rnaseq
deseq2
9.9 years ago
chris86
▴ 420
0
votes
1
reply
4.6k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
9.9 years ago
maedakus
▴ 10
0
votes
1
reply
2.1k
views
Using summarizeOverlaps for bacterial genomes
summarizeoverlaps
bacteria
e coli
unique reads
updated 9.9 years ago by
Valerie Obenchain
★ 6.8k • written 9.9 years ago by
as9309
• 0
1
vote
4
replies
1.7k
views
Using getSequence in BiomaRt to obtain snp's
biomart
9.9 years ago
ken.mcgarry
• 0
0
votes
3
replies
5.1k
views
Creating custom geneset
gseabase
9.9 years ago
pbachali
▴ 50
0
votes
0
replies
1.1k
views
EBseq-HMM needs a lot of memory?
ebseq-hmm
9.9 years ago
liamarseg
• 0
3
votes
5
replies
2.1k
views
SummarizeOverlaps runs much faster than estimated
bioconductor
9.9 years ago
karolina16
• 0
4
votes
5
replies
4.8k
views
Deseq2 unsupervised analysis (heatmap row scaling or none?)
deseq2
pheatmap
9.9 years ago
jarod_v6@libero.it
▴ 40
4
votes
3
replies
1.5k
views
EdgeR: is more than one control per batch an issue?
edgeR
batch effect
updated 9.9 years ago by
Aaron Lun
★ 29k • written 9.9 years ago by
Ekarl2
▴ 80
2
votes
3
replies
1.6k
views
Gviz: Keep transcripts on same line even when using reverseStrand+showId?
gviz
updated 9.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.9 years ago by
stianlagstad
▴ 90
2
votes
4
replies
1.7k
views
Gviz: HighlightTrack doesn't react to reverseStrand = TRUE ?
gviz
updated 9.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.9 years ago by
stianlagstad
▴ 90
1
vote
5
replies
4.3k
views
Showing average of replications on heatmap
deseq2
9.9 years ago
John
▴ 30
0
votes
1
reply
2.1k
views
Obtaining clean data after adjusting for batch effects using SVA
sva
9.9 years ago
Momeneh Foroutan
▴ 10
0
votes
1
reply
976
views
how to install old version biconductor
R
9.9 years ago
Yuan Jian
▴ 250
0
votes
0
replies
1.2k
views
Error message in Rsubread detectionCall command
Rsubread
9.9 years ago
raf4
▴ 30
0
votes
1
reply
1.6k
views
How do I turn off dispersion in DESeq2?
deseq2
dispersion
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
hans
• 0
2
votes
6
replies
1.9k
views
mas5 normalization gives negative values
affy mas5
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
Angel
▴ 40
2
votes
4
replies
4.0k
views
UniProt.ws version 2.10.2
uniprot.ws
subcellular location
uniprot
9.9 years ago
DHS
• 0
10
votes
14
replies
15k
views
how DESeq calculates p-value ?
deseq
differential gene expression
statistics
p-value
updated 4.8 years ago by
Kai_Qi
▴ 20 • written 9.9 years ago by
Giard
▴ 30
4
votes
5
replies
2.8k
views
CAGEr : problem while filtering the bamFile
CAGEr
cage
updated 4.3 years ago by
jingxian.18
• 0 • written 9.9 years ago by
Vivek.b
▴ 100
2
votes
3
replies
2.1k
views
Is there an easy way to extend coverage to seqlengths and fill with zeroes?
coverage
s4vectors
seqlengths
9.9 years ago
liz.ingsimmons
▴ 140
0
votes
0
replies
1.6k
views
Error with qa() in package ShortRead when checking for adapter contamination.
shortread
9.9 years ago
Diego Diez
▴ 760
4
votes
8
replies
13k
views
how to use idat file for analyses in bioconductor
microarray
illumina
idat
updated 9.9 years ago by
Gordon Smyth
53k • written 9.9 years ago by
kritikamish99
▴ 10
1
vote
5
replies
3.8k
views
About methylation data processing
methylation
updated 9.9 years ago by
Peter Hickey
▴ 760 • written 9.9 years ago by
Asma rabe
▴ 290
0
votes
2
replies
1.8k
views
error running ChAMP vignette example
software error
champ
9.9 years ago
Hamid Bolouri
▴ 90
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