0
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0
replies
10
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The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
1 hour ago 315005358 • 0
2
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6
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210
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deseq2 results
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updated 9 hours ago by ★ 1.4k • written 3 days ago by • 0
0
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0
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17
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Error in termSig <= adjs.cutOff when using topGO ks + elim
topGO
10 hours ago adendekk • 0
1
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5
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479
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Can't post a question containing code?
Bioconductor
updated 13 hours ago by • 0 • written 3 months ago by ▴ 10
0
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1
reply
51
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error
Biobase
14 hours ago NATASHA • 0
0
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5
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7.2k
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SingleR Label.Ont
SingleR
written 7 months ago by • 0
3
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10
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286
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Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 19 hours ago by 65k • written 3 days ago by • 0
0
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40
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How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges nullranges
updated 19 hours ago by 42k • written 15 months ago by • 0
0
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2
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How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2 SpikeIn Normalization
updated 21 hours ago by • 0 • written 15 months ago by ▴ 10
0
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1
reply
58
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Differential gene expression analysis results
DESeq2 DifferentialExpression
updated 23 hours ago by ★ 4.1k • written 23 hours ago by • 0
5
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3
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Log-cpm values from limma
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updated 1 day ago by 50k • written 23 days ago by • 0
1
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2
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165
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Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
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2 days ago • updated 1 day ago Dylan.Sheerin • 0
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0
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Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
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1 day ago neilzhao ▴ 30
0
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1
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DSS CpG coverage threshold
DSS WGBS coverage
updated 1 day ago by • 0 • written 6.6 years ago by ▴ 30
1
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267
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News: Nominations for Bioconductor Awards 2024! Deadline May 15
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7 weeks ago • updated 1 day ago shepherl 3.9k
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54
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normalization using Deseq2
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4
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EGSEA usage with microarray data (with vooma)?
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3
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4
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454
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Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 2 days ago by ★ 6.5k • written 5 days ago by • 0
0
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3
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201
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
9 days ago • updated 2 days ago Ian D. ▴ 70
1
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3
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262
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Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
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updated 3 days ago by ★ 4.1k • written 9 days ago by • 0
1
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5
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1.5k
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Cannot connect to ExperimentHub server
ExperimentHub
updated 3 days ago by • 0 • written 5 months ago by • 0
3
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5
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220
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Help with running egsea()
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4 days ago • updated 3 days ago Chris • 0
3
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1
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Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 3 days ago by 50k • written 5.6 years ago by ▴ 10
0
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0
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34
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Treeio as.treedata function seq lenght error
treeio
3 days ago nromerov • 0
3
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4
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235
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Method to find pathways different between 2 groups
fgsea GSVA CAMERA
updated 3 days ago by 50k • written 5 days ago by • 0
1
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1
reply
129
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error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
updated 3 days ago by 65k • written 3 days ago by • 0
4
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9
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450
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Memory errors using read.bismark?
dmrseq bsseq
29 days ago • updated 3 days ago Juan Higareda • 0
1
vote
1
reply
106
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minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 3 days ago by 65k • written 4 days ago by • 0
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1
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66
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Recovering my account credentials on Bioconductor
Bioconductor
updated 3 days ago by 3.9k • written 3 days ago by • 0
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need help with Diffbind multiple groups
DiffBind ChIPSeqData
4 days ago Dinesh • 0
0
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3
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3.7k
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[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz Mfuzz
updated 4 days ago by • 0 • written 13.1 years ago by ▴ 720
0
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3
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145
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Couldn't connect to server while using "pathways"
graphite
updated 4 days ago by 42k • written 5 days ago by • 0
4
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2
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580
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
8 days ago • updated 4 days ago gene_bioconductor ▴ 10
3
votes
1
reply
107
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How to save the DEXSeq results
DEXSeq
updated 4 days ago by 42k • written 4 days ago by • 0
1
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1
reply
100
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Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 4 days ago by 42k • written 4 days ago by ▴ 70
1
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2
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197
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Improving the design matrices vignette in RNAseq123
RNAseq123
18 days ago • updated 4 days ago Lluís Revilla Sancho ▴ 730
2
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3
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207
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package goseq seems to be not available on the latest version of R
goseq
updated 4 days ago by 50k • written 7 days ago by ▴ 20
8
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7
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1.8k
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SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 4 days ago by • 0 • written 6.7 years ago by ▴ 80
0
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5
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2.9k
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DNAString: Standard checksum function?
Biostrings FASTA sequencing
8.2 years ago • updated 5 days ago Henrik Bengtsson ★ 2.4k
2
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2
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185
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fgsea significant result
fgsea
6 days ago • updated 5 days ago Chris • 0
1
vote
1
reply
146
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Handling multiple differential expression comparisons
DESeq2
updated 5 days ago by 42k • written 7 days ago by ▴ 10
2
votes
3
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209
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Too many significant genes when integrating gtex and tcga
RNA-seq DESeq2
updated 5 days ago by ★ 4.1k • written 7 days ago by • 0
42 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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