0
votes
0
replies
6
views
The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
20 minutes ago 315005358 • 0
0
votes
0
replies
16
views
Error in termSig <= adjs.cutOff when using topGO ks + elim
topGO
10 hours ago adendekk • 0
0
votes
1
reply
50
views
error
Biobase
13 hours ago NATASHA • 0
0
votes
1
reply
57
views
Differential gene expression analysis results
DESeq2 DifferentialExpression
updated 23 hours ago by ★ 4.1k • written 23 hours ago by • 0
1
vote
2
replies
164
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
2 days ago • updated 1 day ago Dylan.Sheerin • 0
0
votes
0
replies
28
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer ShinyApps
1 day ago neilzhao ▴ 30
1
vote
0
replies
267
views
News: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition Awards Bioconductor Bioc204
7 weeks ago • updated 1 day ago shepherl 3.9k
0
votes
1
reply
54
views
normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 1 day ago by ★ 4.1k • written 1 day ago by • 0
3
votes
4
replies
454
views
Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 2 days ago by ★ 6.5k • written 5 days ago by • 0
2
votes
6
replies
209
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
updated 8 hours ago by ★ 1.4k • written 2 days ago by • 0
0
votes
0
replies
34
views
Treeio as.treedata function seq lenght error
treeio
3 days ago nromerov • 0
1
vote
1
reply
129
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
updated 3 days ago by 65k • written 3 days ago by • 0
3
votes
10
replies
286
views
Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 18 hours ago by 65k • written 3 days ago by • 0
1
vote
1
reply
106
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 3 days ago by 65k • written 4 days ago by • 0
0
votes
1
reply
66
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 3 days ago by 3.9k • written 3 days ago by • 0
0
votes
0
replies
51
views
need help with Diffbind multiple groups
DiffBind ChIPSeqData
4 days ago Dinesh • 0
3
votes
5
replies
220
views
Help with running egsea()
EGSEA
4 days ago • updated 3 days ago Chris • 0
3
votes
1
reply
107
views
How to save the DEXSeq results
DEXSeq
updated 4 days ago by 42k • written 4 days ago by • 0
3
votes
4
replies
235
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
updated 3 days ago by 50k • written 5 days ago by • 0
0
votes
3
replies
145
views
Couldn't connect to server while using "pathways"
graphite
updated 4 days ago by 42k • written 5 days ago by • 0
1
vote
1
reply
100
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 4 days ago by 42k • written 4 days ago by ▴ 70
1
vote
1
reply
146
views
Handling multiple differential expression comparisons
DESeq2
updated 5 days ago by 42k • written 7 days ago by ▴ 10
2
votes
2
replies
185
views
fgsea significant result
fgsea
6 days ago • updated 5 days ago Chris • 0
0
votes
40
replies
2.9k
views
How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges nullranges
updated 18 hours ago by 42k • written 15 months ago by • 0
2
votes
3
replies
207
views
package goseq seems to be not available on the latest version of R
goseq
updated 4 days ago by 50k • written 7 days ago by ▴ 20
2
votes
3
replies
209
views
Too many significant genes when integrating gtex and tcga
RNA-seq DESeq2
updated 5 days ago by ★ 4.1k • written 7 days ago by • 0
4
votes
2
replies
580
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
8 days ago • updated 4 days ago gene_bioconductor ▴ 10
0
votes
3
replies
201
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
9 days ago • updated 2 days ago Ian D. ▴ 70
1
vote
3
replies
262
views
Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 3 days ago by ★ 4.1k • written 9 days ago by • 0
8
votes
7
replies
1.8k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 4 days ago by • 0 • written 6.7 years ago by ▴ 80
1
vote
2
replies
197
views
Improving the design matrices vignette in RNAseq123
RNAseq123
18 days ago • updated 4 days ago Lluís Revilla Sancho ▴ 730
5
votes
3
replies
267
views
Log-cpm values from limma
limma edgeR RNASeq
updated 1 day ago by 50k • written 22 days ago by • 0
4
votes
9
replies
450
views
Memory errors using read.bismark?
dmrseq bsseq
29 days ago • updated 3 days ago Juan Higareda • 0
1
vote
5
replies
479
views
Can't post a question containing code?
Bioconductor
updated 13 hours ago by • 0 • written 3 months ago by ▴ 10
1
vote
5
replies
1.5k
views
Cannot connect to ExperimentHub server
ExperimentHub
updated 3 days ago by • 0 • written 5 months ago by • 0
0
votes
5
replies
7.2k
views
SingleR Label.Ont
SingleR
written 7 months ago by • 0
0
votes
2
replies
1.5k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2 SpikeIn Normalization
updated 20 hours ago by • 0 • written 15 months ago by ▴ 10
3
votes
1
reply
1.5k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma ebayes bayesian ls
updated 3 days ago by 50k • written 5.6 years ago by ▴ 10
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS WGBS coverage
updated 1 day ago by • 0 • written 6.6 years ago by ▴ 30
2
votes
4
replies
1.7k
views
EGSEA usage with microarray data (with vooma)?
EGSEA gene set testing vooma limma voom gsea
updated 2 days ago by • 0 • written 7.4 years ago by ▴ 190
0
votes
5
replies
2.9k
views
DNAString: Standard checksum function?
Biostrings FASTA sequencing
8.2 years ago • updated 5 days ago Henrik Bengtsson ★ 2.4k
0
votes
3
replies
3.7k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz Mfuzz
updated 4 days ago by • 0 • written 13.1 years ago by ▴ 720
42 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Awards • All
Popular Question to maria.soler • 0
Popular Question to Pietro ▴ 40
Popular Question to neilzhao ▴ 30
Popular Question to ATpoint ★ 4.1k
Teacher to Michael Love 42k
Locations • All
France, just now
the United States, 2 minutes ago
United Kingdom, 9 minutes ago
San Diego, 23 minutes ago
Canada, 1 hour ago
Traffic: 394 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6