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updated 9 days ago by 41k • written 9 days ago by ▴ 20
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9 days ago • updated 7 days ago winwater0928 • 0
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updated 10 days ago by 41k • written 10 days ago by ▴ 40
1
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168
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Citation for edgeR user guide
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updated 10 days ago by 50k • written 10 days ago by ▴ 30
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108
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updated 9 days ago by ★ 1.3k • written 10 days ago by • 0
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10 days ago info ▴ 10
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updated 9 days ago by ▴ 780 • written 11 days ago by • 0
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
11 days ago • updated 8 days ago shuwangxinze1996 • 0
1
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2
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990
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DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
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updated 11 days ago by ▴ 180 • written 14 months ago by ▴ 10
0
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2
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153
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written 11 days ago by • 0
3
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3
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219
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updated 10 days ago by 41k • written 11 days ago by • 0
1
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4
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225
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Error EPICv2 ChAMP
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updated 11 days ago by 65k • written 15 days ago by • 0
0
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1
reply
122
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FDR via q-value
qvalue
updated 11 days ago by 65k • written 14 days ago by • 0
0
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5
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290
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Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
updated 9 days ago by 65k • written 12 days ago by • 0
0
votes
2
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204
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14 days ago • updated 11 days ago catv • 0
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6 months ago • updated 11 days ago shepherl 3.9k
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13
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386
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12 days ago • updated 9 days ago fernanda.backsouza ▴ 10
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0
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13 days ago vaxahey107 • 0
14
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Why p value inconsistent when using different number of pathway score?
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13 days ago • updated 2 days ago Chris • 0
0
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0
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93
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I am trying to detect alternative splicing.
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13 days ago Sebashish • 0
3
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2
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207
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updated 11 days ago by ★ 3.9k • written 14 days ago by ▴ 10
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2
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183
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updated 14 days ago by 65k • written 15 days ago by • 0
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6
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414
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16 days ago • updated 11 days ago Jonathan ▴ 10
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2
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127
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14 days ago prity6459 • 0
0
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3
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181
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updated 14 days ago by 50k • written 15 days ago by • 0
3
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166
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Log-cpm values from limma
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updated 14 days ago by 50k • written 15 days ago by • 0
0
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191
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15 days ago sropri • 0
0
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3
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157
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151
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Adding columns to DEXSeqResults object
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Warning while loading DEP package
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updated 15 days ago by 3.9k • written 15 days ago by • 0
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rlog transformation
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updated 15 days ago by 41k • written 15 days ago by • 0
0
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109
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updated 15 days ago by 41k • written 15 days ago by • 0
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DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
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16 days ago • updated 7 days ago ussarizona ▴ 10
0
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reply
130
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covariate with negative and positive values
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updated 15 days ago by 41k • written 17 days ago by • 0
0
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141
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DESEQ2 output gives multiple groups when only 2 groups are present
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updated 15 days ago by ★ 4.1k • written 16 days ago by • 0
1
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2
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209
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significant difference of p-values with dream() after updating VariancePartition
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15 days ago Le • 0
1
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2
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Error in champ.load(): The following specified files do not exist
ChAMP
16 days ago • updated 15 days ago Sherin • 0
0
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1
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98
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Input Question for deseq.r
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updated 15 days ago by ★ 4.1k • written 16 days ago by • 0
0
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4
replies
233
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Differential peaks that were not identified in diffbind were identified in diseq2
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16 days ago • updated 13 days ago lonn • 0
0
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7
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304
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Methylation Analysis experiment design using Limma
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16 days ago • updated 10 days ago hortense96 • 0
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0
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16 days ago creativepeptides2018 • 0
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16 days ago bocchemistry • 0
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17 days ago bocsci11 • 0
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Syntaxt Error in IsorcorrectoR package with Molecule Info File
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17 days ago Maliha Tabassum • 0
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flowStats
updated 17 days ago by 3.9k • written 18 days ago by • 0
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
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