Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
13
views
Retrieving ceRNA data from the starBase or ENCORI Web API
microRNA
starBase
ceRNA
WebAPI
ENCORI
2 hours ago
Bhavya
• 0
1
vote
0
replies
16
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
4 hours ago
Aleena
▴ 30
0
votes
0
replies
17
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
10 hours ago
Researcher
• 0
0
votes
2
replies
259
views
Can I trust the differential expression analysis when the two groups overlap on the PCA?
DESeq2
pcaExplorer
updated 13 hours ago by
Michael Love
42k • written 19 hours ago by
Eric Katagirya
• 0
0
votes
1
reply
47
views
How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression
TimeCourse
timeOmics
edgeR
RNAseq
updated 14 hours ago by
Gordon Smyth
50k • written 16 hours ago by
Ashley
• 0
3
votes
4
replies
230
views
Store output of matchPWM()
biostrings
Biostrings
12 days ago • updated 16 hours ago
mat149
▴ 70
0
votes
0
replies
18
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
16 hours ago • updated 13 hours ago
BioinfGuru
▴ 30
0
votes
0
replies
27
views
normalization across different species for DESeq2 analysis
DESeq2
normalization
Normalization
acrossspecies
22 hours ago
piemmea
• 0
0
votes
1
reply
40
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
updated 22 hours ago by
Guido Hooiveld
★ 3.9k • written 23 hours ago by
Yveto
• 0
0
votes
0
replies
22
views
How to design DEXSeq formula for multiple variables
DEXSeq
23 hours ago • updated 6 hours ago
Sara
• 0
0
votes
1
reply
68
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 1 day ago by
Guido Hooiveld
★ 3.9k • written 1 day ago by
aogunbaw
• 0
0
votes
3
replies
93
views
ChAMP installation issue
Cha
ChAMP
1 day ago • updated 6 hours ago
e1271094
• 0
0
votes
0
replies
27
views
Anti-Human APCS Recombinant Antibody (Dezamizumab)
healthyFlowData
1 day ago
Lupe
• 0
0
votes
0
replies
47
views
Batch effect correction: methylome data
sesame
BatchEffect
MethylationArray
2 days ago
Seungmin
• 0
0
votes
1
reply
192
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
2 days ago • updated 18 hours ago
Matthew Thornton
▴ 350
0
votes
3
replies
7.9k
views
SingleR Label.Ont
SingleR
updated 3 days ago by
Denis
• 0 • written 8 months ago by
saeed.khalili
• 0
0
votes
0
replies
61
views
The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
3 days ago
315005358
• 0
0
votes
1
reply
88
views
error
Biobase
3 days ago
NATASHA
• 0
0
votes
1
reply
100
views
Differential gene expression analysis results
DESeq2
DifferentialExpression
updated 4 days ago by
ATpoint
★ 4.1k • written 4 days ago by
sajadahmad41454
• 0
1
vote
2
replies
206
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq
duplicateCorrelation
limma
voom
5 days ago • updated 4 days ago
Dylan.Sheerin
• 0
0
votes
0
replies
45
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
4 days ago
neilzhao
▴ 30
1
vote
0
replies
292
views
News:
Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 5 days ago
shepherl
3.9k
0
votes
1
reply
79
views
normalization using Deseq2
DESeq2
rnaseqGene
Normalization
updated 5 days ago by
ATpoint
★ 4.1k • written 5 days ago by
sajadahmad41454
• 0
3
votes
4
replies
481
views
Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 6 days ago by
Mike Smith
★ 6.5k • written 8 days ago by
robersy
• 0
2
votes
7
replies
314
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
6 days ago • updated 3 days ago
sajadahmad41454
• 0
0
votes
0
replies
51
views
Treeio as.treedata function seq lenght error
treeio
6 days ago
nromerov
• 0
2
votes
2
replies
241
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
6 days ago • updated 1 day ago
zzrammal
• 0
3
votes
10
replies
398
views
Extremely small p-values using Limma for proteomic data
Proteomics
limma
updated 4 days ago by
James W. MacDonald
65k • written 6 days ago by
Abbey
• 0
2
votes
1
reply
134
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 7 days ago by
James W. MacDonald
65k • written 7 days ago by
e1271094
• 0
0
votes
1
reply
85
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 7 days ago by
shepherl
3.9k • written 7 days ago by
cyril.dalmasso
• 0
0
votes
0
replies
69
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
7 days ago
Dinesh
• 0
3
votes
5
replies
247
views
Help with running egsea()
EGSEA
7 days ago • updated 6 days ago
Chris
▴ 10
3
votes
1
reply
127
views
How to save the DEXSeq results
DEXSeq
updated 7 days ago by
Michael Love
42k • written 7 days ago by
Sara
• 0
3
votes
4
replies
262
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
updated 6 days ago by
Gordon Smyth
50k • written 8 days ago by
Chris
▴ 10
0
votes
3
replies
180
views
Couldn't connect to server while using "pathways"
graphite
updated 7 days ago by
Michael Love
42k • written 8 days ago by
fduguchunhui
• 0
1
vote
1
reply
117
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 8 days ago by
Michael Love
42k • written 8 days ago by
mat149
▴ 70
1
vote
1
reply
165
views
Handling multiple differential expression comparisons
DESeq2
updated 9 days ago by
Michael Love
42k • written 10 days ago by
Zainab
▴ 10
2
votes
2
replies
205
views
fgsea significant result
fgsea
9 days ago • updated 8 days ago
Chris
▴ 10
0
votes
44
replies
3.0k
views
How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges
nullranges
updated 3 hours ago by
Michael Love
42k • written 15 months ago by
Poonam
• 0
0
votes
6
replies
264
views
Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 10 days ago by
swbarnes2
★ 1.4k • written 11 days ago by
arfranco
▴ 130
1
vote
2
replies
381
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 10 days ago by
Gordon Smyth
50k • written 10 days ago by
Kim
• 0
2
votes
3
replies
233
views
package goseq seems to be not available on the latest version of R
goseq
updated 8 days ago by
Gordon Smyth
50k • written 10 days ago by
Patrycja
▴ 20
2
votes
3
replies
230
views
Too many significant genes when integrating gtex and tcga
RNA-seq
DESeq2
updated 9 days ago by
ATpoint
★ 4.1k • written 10 days ago by
Reza
• 0
0
votes
0
replies
107
views
dba.plotProfile() plotting and interpretation
DiffBind
10 days ago
Henry
▴ 10
0
votes
1
reply
161
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 11 days ago by
Gordon Smyth
50k • written 11 days ago by
z_bahari
• 0
0
votes
1
reply
144
views
Gene-by-sample covariates in limma
Metabolomics
limma
updated 11 days ago by
Gordon Smyth
50k • written 11 days ago by
c53aba27
• 0
4
votes
2
replies
603
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
11 days ago • updated 7 days ago
gene_bioconductor
▴ 10
0
votes
0
replies
88
views
flowStats for CyTOF
flowStats
11 days ago
tholmes
• 0
0
votes
2
replies
143
views
DESeq2 v1.35.0
DESeq2
updated 11 days ago by
Michael Love
42k • written 11 days ago by
Espresso
• 0
0
votes
0
replies
83
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
11 days ago
yvonneh
• 0
195 results • Page
1 of 4
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
To me, 100 and 200 kb both look fine. You want to have blocks smaller than segmentation regions.
Comment: ChAMP installation issue
by
e1271094
• 0
I discovered that the dataset data("probe.features.epicv1") is unavailable. Instead, the dataset data("probe.features.epic") is accessible.…
Comment: ChAMP installation issue
by
e1271094
• 0
I apologise for any inconvenience. I have successfully installed the ChAMP package. However, I am now encountering a new error: myLoad <- …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…
Answer: Can I trust the differential expression analysis when the two groups overlap on
by
Michael Love
42k
Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …
Votes
Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
Awards
• All
Scholar
to
mat149
▴ 70
Popular Question
to
Gordon Smyth
50k
Popular Question
to
maria.soler
• 0
Popular Question
to
Pietro
▴ 40
Popular Question
to
neilzhao
▴ 30
Locations
• All
France,
1 minute ago
United States,
10 minutes ago
France,
16 minutes ago
United States,
25 minutes ago
India,
33 minutes ago
Traffic: 969 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6