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69
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 4 days ago by
Chaoability
• 0
0
votes
0
replies
13
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
11 days ago
Maya
0
0
votes
0
replies
9
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
TOAST
11 days ago
Maya
0
0
votes
0
replies
9
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
11 days ago
Maya
0
0
votes
0
replies
8
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
11 days ago
Maya
0
0
votes
0
replies
9
views
Spam:
Career Growth After CCNP Certification Training: Roles, Salaries & Opportunities
ScreenR
11 days ago
Maya
0
0
votes
0
replies
75
views
PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
17 days ago
bolusharris
• 0
0
votes
1
reply
138
views
DECIPHER DesignProbes unable to design FISH-probes
decipher
FISH
DECIPHER
FISH-probe
probe-design
updated 6 days ago by
Erik Wright
▴ 150 • written 18 days ago by
vreinmuth
• 0
3
votes
5
replies
411
views
upstream git branches of bioc-release
Bioconductor
written 19 days ago by
Jeroen
▴ 10
0
votes
1
reply
319
views
org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4
org.Ss.eg.db
AnnotationDbi
written 3 months ago by
Adam Munhall
• 0
0
votes
1
reply
307
views
GOseq Probability Weight Function bad fit
goseq
written 11 weeks ago by
francesca
• 0
0
votes
2
replies
133
views
APAlyzer
APAlyzer
updated 24 days ago by
Kevin Blighe
★ 4.0k • written 26 days ago by
anjanaram1
▴ 10
0
votes
1
reply
2.0k
views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
updated 24 days ago by
Stefano Mangiola
▴ 40 • written 4.9 years ago by
Chantel
• 0
0
votes
0
replies
7
views
Spam:
Best Rehab Center In India | Luxury, Alcohol & Mental Health Care
COSMIC.67
12 weeks ago
Best Rehab Center
0
0
votes
0
replies
6
views
Spam:
Exploring Robotic Hair Restoration Procedure
COSMIC.67
3 months ago
paseje6172
0
0
votes
0
replies
279
views
Y-axis break ihn Volcano Plot
EnhancedVolcano
Y-axis_break
Volcano_Plot
6 months ago
rajdeepboral00
• 0
0
votes
0
replies
264
views
getQC(RGset.raw) from IlluminaHumanMethylationMSAmanifest
getQC
hcg110.db
updated 6 months ago by
shepherl
4.2k • written 6 months ago by
zwang072005
• 0
0
votes
0
replies
259
views
DiffBind plot.profile error
BiocParallel
DiffBind
6 months ago
this_is_me_trying
• 0
0
votes
1
reply
642
views
Using EBI Image on Ranged Bar Chart
EBImage
written 6 months ago by
ekatcher
• 0
1
vote
3
replies
1.2k
views
Possible issue following the logNormCounts(filtered) with resulted fit
single-cell
SingleCell
SingleCellExperiment
SingleCellWorkflow
SingleCellData
6 months ago
Konstantinos Yeles
▴ 90
0
votes
2
replies
574
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 3 months ago by
Liona
• 0 • written 6 months ago by
Maria Doyle
▴ 110
0
votes
0
replies
296
views
Blank gene_id in featureCounts
featureCounts
Rsubread
6 months ago
Meg
• 0
0
votes
1
reply
551
views
FCS 32 support going backwards?
flowCore
updated 6 months ago by
shosioness123q
• 0 • written 6 months ago by
Oliver
• 0
0
votes
0
replies
350
views
What Input-type do I use in decouplR::run_viper?
decoupleR
viper
updated 6 months ago by
Michael Love
43k • written 6 months ago by
Julian
• 0
0
votes
0
replies
324
views
Combining COMBAT-seq result (raw count) with other raw count
rnaseq
combat-seq
sva
combat
bulk-rnaseq
6 months ago
dudwnsrla1
• 0
0
votes
1
reply
531
views
Can't install BioC packages (and manager) behind firewall
Install
updated 6 months ago by
Marcel Ramos
700 • written 7 months ago by
delphine
• 0
0
votes
0
replies
1.1k
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq
profileplyr
DiffBind
7 months ago
Muhammad
• 0
0
votes
1
reply
697
views
Combat-seq usage
sva
7 months ago • updated 6 months ago
bbao
▴ 10
0
votes
1
reply
411
views
What happened to the Joost2016 dataset
org.Sc.sgd.db
updated 7 months ago by
shepherl
4.2k • written 7 months ago by
clementleong
• 0
0
votes
2
replies
671
views
FlowSOM is unable to create Output
FlowSOM
updated 6 months ago by
EvangelinePope
• 0 • written 7 months ago by
marco.klein1
• 0
0
votes
6
replies
1.8k
views
Discrepancies in normalised count data vs unnormalised
DESeq2
7 months ago • updated 6 months ago
AMgroup
• 0
0
votes
0
replies
469
views
Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma
probe
DMRcate
GenomicRanges
DifferentialMethylation
7 months ago
jamiecatalano2
• 0
0
votes
0
replies
370
views
Batch correction for microarray
BatchEffect
sva
MicroarrayData
7 months ago
Shaimaa Gamal
• 0
0
votes
0
replies
212
views
GRaNIE with no internet
GRaNIE
8 months ago
maia.malonzo
• 0
0
votes
0
replies
258
views
Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
8 months ago
Javier
• 0
0
votes
0
replies
358
views
I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap
mergingpeaks
ChIPseq
DiffBind
8 months ago
atlanta
• 0
1
vote
1
reply
1.3k
views
Differential expression analysis using two TCGA datasets
DifferentialExpression
TCGAbiolinks
RNASeq
updated 8 months ago by
ATpoint
★ 5.0k • written 8 months ago by
Shaimaa Gamal
• 0
1
vote
0
replies
556
views
Modelling gene program dynamics across time with {lemur}
lemur
8 months ago
BiotechPedro
▴ 10
0
votes
1
reply
581
views
Intepretation of results
AUCell
written 8 months ago by
jasperwong_123
• 0
0
votes
4
replies
2.3k
views
DiffBind can't find a DAR
dar
ATACSeq
DiffBind
8 months ago • updated 7 months ago
Mengjun
• 0
1
vote
3
replies
1.1k
views
DESeq - help with pair wise comparisons
DESeq2
8 months ago
bd2000
▴ 30
0
votes
0
replies
26
views
Spam:
Looking for Josey Wales Jacket?
MethylSeekR
8 months ago
Shoqz
0
0
votes
0
replies
18
views
Spam:
Experience lasting confidence with Vidalista 40 mg
org.Sc.sgd.db
8 months ago
irenejoshi07
0
0
votes
4
replies
1.5k
views
Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
tximport
rhdf5
8 months ago
Sofia
• 0
1
vote
1
reply
1.0k
views
ComBat with repeated measures
ComBat
sva
updated 8 months ago by
ATpoint
★ 5.0k • written 8 months ago by
s20
• 0
0
votes
0
replies
246
views
Correlation threshold
MethylationArray
methylationArrayAnalysis
StatisticalMethod
8 months ago
user_bioinfo
• 0
0
votes
5
replies
887
views
Bioconductor unable to update 'curl'
curl
HELP
8 months ago
kagodwi2
• 0
0
votes
4
replies
2.4k
views
Ensembl site unresponsive via biomaRt
biomaRt
updated 7 months ago by
darylruiz6545
• 0 • written 8 months ago by
hebda
• 0
0
votes
1
reply
494
views
GAGE kegg.gsets() self-signed certificate error
gageData
gage
9 months ago • updated 8 months ago
Lucas
• 0
0
votes
0
replies
259
views
DiffBind multi-tissue comparison
DiffBind
9 months ago
lryrainche
• 0
1,000 results • Page
1 of 20
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Comment: Bioinformatician at the Lausanne University Hospital
by
eja.ger.m
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For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
TikTsoksocissalpc
• 0
Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…
Comment: p.adjust BH Question
by
TikTsoksocissalpc
• 0
Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…
Answer: NUPOP usage
by
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4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
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In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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Comment: upstream git branches of bioc-release
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