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0
votes
0
replies
1.1k
views
Pysam pileup and Rsamtools pileup output discrepancy
Pysam
pileup
Rsamtools
RNASeq
2.3 years ago
Xinqi
• 0
0
votes
0
replies
992
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
2.3 years ago
Sara
• 0
0
votes
0
replies
766
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS
admixMap
2.3 years ago
mailtoshivam13
• 0
0
votes
0
replies
952
views
clusterProfiler code to GO enrichment analysis seems to be incomplete
clusterProfiler
DifferentialExpression
2.3 years ago
nromerov
• 0
0
votes
1
reply
1.1k
views
Subsetting cells from a single cell experiment
SingleCellExperiment
written 2.3 years ago by
megan
• 0
0
votes
0
replies
597
views
loadstudy and cBioDataPack return error in vroom_
cBioPortalData
2.3 years ago
karam
• 0
0
votes
0
replies
1000
views
DiffBind dba.count() crash/can't finish problems
dba.count
DiffBind
ATACSeq
updated 2.3 years ago by
James W. MacDonald
68k • written 2.3 years ago by
sophie.hfliu
• 0
0
votes
1
reply
859
views
Gene names from Matrix
BioCor
StarBioTrek
MatrixGenerics
updated 21 months ago by
Lluís Revilla Sancho
▴ 760 • written 2.3 years ago by
karmasstark
• 0
0
votes
2
replies
1.0k
views
bug in block.plsda from mixOmics?
mixOmics
2.3 years ago
Lluís Revilla Sancho
▴ 760
0
votes
2
replies
2.4k
views
using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Rsubread
2.3 years ago
Gregory
• 0
0
votes
1
reply
1.2k
views
Comparing RNASeq data from multiple studies
RNASeqData
RnaSeqSampleSize
RNASeqPower
RNASeq
updated 2.3 years ago by
Basti
▴ 780 • written 2.3 years ago by
Luke
• 0
0
votes
2
replies
952
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
2.3 years ago
EspressoKris
▴ 10
0
votes
3
replies
1.3k
views
Suggested package missing from Development version of Bioconductor
Devel
updated 2.3 years ago by
shepherl
4.3k • written 2.3 years ago by
Richard
• 0
0
votes
0
replies
692
views
mixOmics with Bioconductor classes
mixOmics
2.3 years ago
Lluís Revilla Sancho
▴ 760
0
votes
0
replies
898
views
featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
2.3 years ago
Kilian
• 0
0
votes
1
reply
747
views
HTSeqGenie runs very slow
HTSeqGenie
2.3 years ago
zh9118
• 0
0
votes
0
replies
841
views
Why there are two pfms in the result of oligoSummary function of ChIPpeakAnno package?
ChIPpeakAnno
ChIPSeq
MotifDiscovery
2.3 years ago
franciscrick41
• 0
0
votes
1
reply
871
views
Specifying evidence channels in STRINGdb
STRINGdb
stringdb
2.3 years ago
robynne.braun
• 0
0
votes
0
replies
1.4k
views
Variant Filtering on very large VCF files
VariantAnnotation
VariantFiltering
2.3 years ago
Bogdan
▴ 670
0
votes
0
replies
878
views
Fatal error: Wrong thread calling 'RunFinalizers'
featureCount
Rsubread
HPC
2.3 years ago
kthapa
• 0
0
votes
0
replies
582
views
Huge effect of a single sample on DEGs
limma
2.3 years ago
Jonathan
▴ 10
0
votes
2
replies
3.0k
views
Bioconductor version cannot be validated
Bioconductor
updated 2.2 years ago by
Manuel
• 0 • written 2.3 years ago by
xlu.cpu
• 0
0
votes
1
reply
979
views
T.fit function of maSigPro returns error message
maSigPro
2.3 years ago
hanna.g
• 0
0
votes
4
replies
4.1k
views
pathview error "negative length vectors are not allowed
pathview
kegg
KEGG
updated 15 months ago by
Evan
• 0 • written 2.4 years ago by
Mauricio Diego
• 0
0
votes
1
reply
755
views
TxDb.Dmelanogaster.UCSC.dm3.ensGene
TxDb.Dmelanogaster.UCSC.dm3.ensGene
updated 2.4 years ago by
ATpoint
★ 5.0k • written 2.4 years ago by
Gh
• 0
0
votes
0
replies
700
views
DTU analysis with factorial model
IsoformSwitchAnalyzeR
satuRn
2.4 years ago
jbono
▴ 10
0
votes
0
replies
655
views
CpG coverage with MEDIPS
MEDIPS
CpG
2.4 years ago
greta
• 0
3
votes
1
reply
959
views
NPARC package y-variable
NPARC
NPA
updated 2.4 years ago by
nils.kurzawa
▴ 20 • written 2.4 years ago by
Aidan
• 0
0
votes
0
replies
744
views
Error ambiguity characters in sequences
BSgenomeForge
2.4 years ago
Bruno
• 0
0
votes
0
replies
697
views
How to use erccdashboard with erccmix="Single" design
RNASeqData
erccdashboard
2.4 years ago
adi.rotem
• 0
0
votes
0
replies
565
views
maSigPro drug concentration
maSigPro
2.4 years ago
jiawen
• 0
0
votes
0
replies
740
views
Rsubread subjunc reporting 255 kb introns with exon limits mapping to A-rich region
Rsubread
updated 2.4 years ago by
Gordon Smyth
53k • written 2.4 years ago by
Cosmin Saveanu
• 0
0
votes
0
replies
745
views
HeatPlot - Genes selections
enrichplot
stringr
heatplot
2.4 years ago
ruba-mahmoud
• 0
0
votes
0
replies
1.1k
views
NAs in tabular output from DNAcopy
Bioconductor
DNAcopy
2.4 years ago
NewtoBioconductor
• 0
1
vote
0
replies
916
views
Differential abundance analysis of phosphoproteomics data with multiple time points and conditions
Proteomics
DifferentialRegulation
limma
2.4 years ago
svlachavas
▴ 840
0
votes
1
reply
1.2k
views
Samples have been merged or lost during counting. Check for duplicate bam files. DiffBind dbacount
DiffBind
2.4 years ago
Mark
▴ 10
0
votes
0
replies
864
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
2.4 years ago
ali.oghabian
• 0
0
votes
0
replies
941
views
Try to understand better how to set out an effective sample size within the MetagenomSeq package in microbiome ?
Metagenomics
metagenomeSeq
microbiome
phyloseq
microbiomeDataSets
2.4 years ago
Mohamed
▴ 30
0
votes
1
reply
914
views
Cant post a bug report
msa
updated 2.0 years ago by
alexandre.blais
▴ 50 • written 2.4 years ago by
Torbjørn
• 0
0
votes
0
replies
623
views
Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
2.5 years ago
Sean
• 0
0
votes
0
replies
1.3k
views
conversion a VCF file into a MAF file
VCFArray
maftools
2.5 years ago
Bogdan
▴ 670
0
votes
2
replies
1.2k
views
R session aborts after running align function on Rsubread
Rsubread
Alignment
updated 2.5 years ago by
Wei Shi
★ 3.6k • written 2.5 years ago by
amanda.gutierrez
• 0
0
votes
0
replies
581
views
`maigesPack` needs to declate a `Suggest` for `vsn`
maigesPack
2.5 years ago
martin.grigorov
▴ 10
0
votes
2
replies
1.4k
views
Can't post a job oppurtunity
JobPosting
job
updated 2.0 years ago by
alexandre.blais
▴ 50 • written 2.5 years ago by
jlaird1
• 0
0
votes
2
replies
2.6k
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData
Rsubread
mapping
featurecounts
updated 2.5 years ago by
James W. MacDonald
68k • written 2.5 years ago by
vitoriastavis
• 0
0
votes
1
reply
818
views
Gene expression analysis and network construction for bachelor thesis
bachelorthesis
help
HELP
updated 2.5 years ago by
DrFizz
• 0 • written 2.5 years ago by
melander
• 0
0
votes
0
replies
1.1k
views
MethylKit::calculateDiffMeth with two experimental factors
methylKit
2.5 years ago
Andrés
• 0
0
votes
0
replies
729
views
`R CMD check` failure on Linux aarch64 for DMRScan
DMRScan
updated 2.5 years ago by
ATpoint
★ 5.0k • written 2.5 years ago by
martin.grigorov
▴ 10
0
votes
3
replies
1.5k
views
insufficient unique points for computing knee/inflection points
DropletUtils
SingleCellData
updated 2.5 years ago by
ATpoint
★ 5.0k • written 2.5 years ago by
p.vlachou-efstathiou
• 0
0
votes
0
replies
661
views
OpenCyto polyFunctions
openCyto
2.5 years ago
Albert
• 0
1,000 results • Page
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Comment: Open Positions for Doctoral Researchers in Molecular Medicine
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TikTs33ssalpc
• 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
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TikTs33ssalpc
• 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa
by
ATpoint
★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help
by
Jeremy
• 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
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by
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53k
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