0
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0
replies
1.1k
views
Pysam pileup and Rsamtools pileup output discrepancy
Pysam pileup Rsamtools RNASeq
2.3 years ago Xinqi • 0
0
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0
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992
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Using DADA2 for finding viral sequence variants
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2.3 years ago Sara • 0
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0
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766
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How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
2.3 years ago mailtoshivam13 • 0
0
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0
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952
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clusterProfiler code to GO enrichment analysis seems to be incomplete
clusterProfiler DifferentialExpression
2.3 years ago nromerov • 0
0
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1
reply
1.1k
views
Subsetting cells from a single cell experiment
SingleCellExperiment
written 2.3 years ago by • 0
0
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0
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597
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loadstudy and cBioDataPack return error in vroom_
cBioPortalData
2.3 years ago karam • 0
0
votes
0
replies
1000
views
DiffBind dba.count() crash/can't finish problems
dba.count DiffBind ATACSeq
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
1
reply
859
views
Gene names from Matrix
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updated 21 months ago by ▴ 760 • written 2.3 years ago by • 0
0
votes
2
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bug in block.plsda from mixOmics?
mixOmics
2.3 years ago Lluís Revilla Sancho ▴ 760
0
votes
2
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2.4k
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using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Rsubread
2.3 years ago Gregory • 0
0
votes
1
reply
1.2k
views
Comparing RNASeq data from multiple studies
RNASeqData RnaSeqSampleSize RNASeqPower RNASeq
updated 2.3 years ago by ▴ 780 • written 2.3 years ago by • 0
0
votes
2
replies
952
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Singlecell protein surface (ADT) pseudotime techniques
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2.3 years ago EspressoKris ▴ 10
0
votes
3
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1.3k
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Suggested package missing from Development version of Bioconductor
Devel
updated 2.3 years ago by 4.3k • written 2.3 years ago by • 0
0
votes
0
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692
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mixOmics with Bioconductor classes
mixOmics
2.3 years ago Lluís Revilla Sancho ▴ 760
0
votes
0
replies
898
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featureCounts error Assertion failed: (NULL == pairer -> bam_margin_table -> appendix2), function SAM_pairer_finish_margin_table, file input-files.c,…
NewWave
2.3 years ago Kilian • 0
0
votes
1
reply
747
views
HTSeqGenie runs very slow
HTSeqGenie
2.3 years ago zh9118 • 0
0
votes
0
replies
841
views
Why there are two pfms in the result of oligoSummary function of ChIPpeakAnno package?
ChIPpeakAnno ChIPSeq MotifDiscovery
2.3 years ago franciscrick41 • 0
0
votes
1
reply
871
views
Specifying evidence channels in STRINGdb
STRINGdb stringdb
2.3 years ago robynne.braun • 0
0
votes
0
replies
1.4k
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Variant Filtering on very large VCF files
VariantAnnotation VariantFiltering
2.3 years ago Bogdan ▴ 670
0
votes
0
replies
878
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Fatal error: Wrong thread calling 'RunFinalizers'
featureCount Rsubread HPC
2.3 years ago kthapa • 0
0
votes
0
replies
582
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Huge effect of a single sample on DEGs
limma
2.3 years ago Jonathan ▴ 10
0
votes
2
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3.0k
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Bioconductor version cannot be validated
Bioconductor
updated 2.2 years ago by • 0 • written 2.3 years ago by • 0
0
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1
reply
979
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T.fit function of maSigPro returns error message
maSigPro
2.3 years ago hanna.g • 0
0
votes
4
replies
4.1k
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pathview error "negative length vectors are not allowed
pathview kegg KEGG
updated 15 months ago by • 0 • written 2.4 years ago by • 0
0
votes
1
reply
755
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TxDb.Dmelanogaster.UCSC.dm3.ensGene
TxDb.Dmelanogaster.UCSC.dm3.ensGene
updated 2.4 years ago by ★ 5.0k • written 2.4 years ago by • 0
0
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0
replies
700
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DTU analysis with factorial model
IsoformSwitchAnalyzeR satuRn
2.4 years ago jbono ▴ 10
0
votes
0
replies
655
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CpG coverage with MEDIPS
MEDIPS CpG
2.4 years ago greta • 0
3
votes
1
reply
959
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NPARC package y-variable
NPARC NPA
updated 2.4 years ago by ▴ 20 • written 2.4 years ago by • 0
0
votes
0
replies
744
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Error ambiguity characters in sequences
BSgenomeForge
2.4 years ago Bruno • 0
0
votes
0
replies
697
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How to use erccdashboard with erccmix="Single" design
RNASeqData erccdashboard
2.4 years ago adi.rotem • 0
0
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0
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565
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maSigPro drug concentration
maSigPro
2.4 years ago jiawen • 0
0
votes
0
replies
740
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Rsubread subjunc reporting 255 kb introns with exon limits mapping to A-rich region
Rsubread
updated 2.4 years ago by 53k • written 2.4 years ago by • 0
0
votes
0
replies
745
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HeatPlot - Genes selections
enrichplot stringr heatplot
2.4 years ago ruba-mahmoud • 0
0
votes
0
replies
1.1k
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NAs in tabular output from DNAcopy
Bioconductor DNAcopy
2.4 years ago NewtoBioconductor • 0
1
vote
0
replies
916
views
Differential abundance analysis of phosphoproteomics data with multiple time points and conditions
Proteomics DifferentialRegulation limma
2.4 years ago svlachavas ▴ 840
0
votes
1
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1.2k
views
Samples have been merged or lost during counting. Check for duplicate bam files. DiffBind dbacount
DiffBind
2.4 years ago Mark ▴ 10
0
votes
0
replies
864
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Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
2.4 years ago ali.oghabian • 0
0
votes
0
replies
941
views
Try to understand better how to set out an effective sample size within the MetagenomSeq package in microbiome ?
Metagenomics metagenomeSeq microbiome phyloseq microbiomeDataSets
2.4 years ago Mohamed ▴ 30
0
votes
1
reply
914
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Cant post a bug report
msa
updated 2.0 years ago by ▴ 50 • written 2.4 years ago by • 0
0
votes
0
replies
623
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Comparing compounds in CheminneR
Cheminformatics ChemmineR ChemmineDrugs
2.5 years ago Sean • 0
0
votes
0
replies
1.3k
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conversion a VCF file into a MAF file
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2.5 years ago Bogdan ▴ 670
0
votes
2
replies
1.2k
views
R session aborts after running align function on Rsubread
Rsubread Alignment
updated 2.5 years ago by ★ 3.6k • written 2.5 years ago by • 0
0
votes
0
replies
581
views
`maigesPack` needs to declate a `Suggest` for `vsn`
maigesPack
2.5 years ago martin.grigorov ▴ 10
0
votes
2
replies
1.4k
views
Can't post a job oppurtunity
JobPosting job
updated 2.0 years ago by ▴ 50 • written 2.5 years ago by • 0
0
votes
2
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understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData Rsubread mapping featurecounts
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
0
votes
1
reply
818
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Gene expression analysis and network construction for bachelor thesis
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updated 2.5 years ago by • 0 • written 2.5 years ago by • 0
0
votes
0
replies
1.1k
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MethylKit::calculateDiffMeth with two experimental factors
methylKit
2.5 years ago Andrés • 0
0
votes
0
replies
729
views
`R CMD check` failure on Linux aarch64 for DMRScan
DMRScan
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by ▴ 10
0
votes
3
replies
1.5k
views
insufficient unique points for computing knee/inflection points
DropletUtils SingleCellData
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by • 0
0
votes
0
replies
661
views
OpenCyto polyFunctions
openCyto
2.5 years ago Albert • 0
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