1
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0
replies
671
views
Attempting to import SBML file using R
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updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 10
0
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0
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1.0k
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help with converting MSTRG tags with isoformswictanalyzer
stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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Cannot read biom file in R
RESOLVE
updated 2.1 years ago by 4.2k • written 2.1 years ago by • 0
1
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1
reply
637
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Minimum datasets needed for meta analysis
RnaSeqSampleSize
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by ▴ 10
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0
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642
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Normalising processed Proteomics data in R
Bioconductor Proteomics
2.1 years ago Joshua • 0
0
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1
reply
926
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Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
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0
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832
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SomaticSignatures normalization for trinucleotide motifs in reference genome
Normalization SomaticSignatures
2.1 years ago vasily.dobrovolsky • 0
0
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1
reply
795
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Strange behaviour in Rsubread when trimming sequences leading to a change inthe order of the reads
Rsubread
updated 2.1 years ago by 53k • written 2.1 years ago by • 0
0
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0
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619
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GaussNorm fails to recognize flowFrames in flowSet as individual elements
flowStats
2.1 years ago mikkel.byrdal • 0
0
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0
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Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
csaw ChIPseq DiffBind
2.1 years ago jared.andrews07 ▴ 30
0
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0
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632
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accesing gene name RNAseq
genetics GeneticsPed Genetics
2.1 years ago Gülsüm • 0
0
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0
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731
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Identifying populations within a FlowSOM tree
FlowSOM
2.1 years ago agus_rizzo • 0
0
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1
reply
686
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COTAN mantainance
BuildReport
updated 2.1 years ago by 4.2k • written 2.1 years ago by • 0
0
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0
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1.6k
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Version map cannot be validated - not mapping to new bioconductor website
Install
2.1 years ago Alexander • 0
0
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0
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501
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R/sql code to find the haplotype data from patient's rsIDs
starallele phenoTest
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
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1
reply
651
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Incorrect display of Y-axis
trackViewer
updated 2.1 years ago by ★ 1.3k • written 2.1 years ago by • 0
0
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2
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924
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combat output NaN
sva
2.1 years ago maxixian1990 • 0
0
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1
reply
910
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DESeq2 interaction between one continuous variable and one categorical variable
RNASeqData DESeq2
updated 2.1 years ago by ★ 13k • written 2.1 years ago by • 0
0
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2
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936
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Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
2.1 years ago mrescan • 0
0
votes
0
replies
608
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nondetects and technical replicates
qPCR nondetects
2.1 years ago Ed Siefker ▴ 230
0
votes
0
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614
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SGSeq how export PSI values for each typr of splice variant
SGSeq
2.1 years ago Alison • 0
0
votes
3
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1.4k
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Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
2.1 years ago blessybo • 0
0
votes
0
replies
877
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Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
2.1 years ago dbsgtk • 0
1
vote
0
replies
1.1k
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Gviz : UcscTrack
rtracklayer UCSC Gviz
2.1 years ago yujin ▴ 10
1
vote
1
reply
959
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DEXSeq DEXSeqDataSet count matrix duplication
DEXSeq DRIMSeq DEXSeqDataSet columnduplication
2.2 years ago NiKo ▴ 10
0
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0
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748
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Mfuzz package loading issues
Mfuzz MacBook loadingissues
2.2 years ago Jon • 0
0
votes
1
reply
676
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Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 2.2 years ago by 4.2k • written 2.2 years ago by ▴ 30
0
votes
0
replies
866
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Include or exclude N/A genes (those without any KEGG annotation) when running Wilcox test?
KEGGREST KEGG RNASeq
2.2 years ago mch • 0
0
votes
4
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1.6k
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Mfuzz package loading issues
Mfuzz loadingissues macbook
2.2 years ago Jon • 0
0
votes
2
replies
871
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Can you help me generate a Bsgenome of the fusion genome of a human and HIV-1 virus?
BSgenome.Hsapiens.NCBI.GRCh38
2.2 years ago 13273976287 • 0
2
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10
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2.4k
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Accounting for Batch effect reduces DEGs drastically
DESeq2
2.2 years ago • updated 2.1 years ago rohitsatyam102 ▴ 20
0
votes
3
replies
1.2k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.2 years ago by 53k • written 2.2 years ago by • 0
0
votes
2
replies
1.0k
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can't update bioconductor 3.18
BioCor bioc BiocVersion
2.2 years ago feifan • 0
1
vote
2
replies
1.3k
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How do I select a subset of genes for functional enrichment(GO/KEGG) analysis from WGCNA results?
WGCNA
written 2.2 years ago by ▴ 10
0
votes
0
replies
671
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proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv error estimateSizeFactorsForMatrix
2.2 years ago Chris • 0
0
votes
1
reply
1.6k
views
Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
2.2 years ago leon • 0
0
votes
0
replies
761
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is Dada2 biased toward a particular sequence ?
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2.2 years ago Sara • 0
0
votes
2
replies
775
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DESeq2: how could the lower mean abundance treatment show a positive and significant LFC?
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2.2 years ago Roey Angel • 0
0
votes
4
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1.7k
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Retrieve gene ontologies (GO) for genes and a species by REST API
GO ensembldb
2.2 years ago Rockbar • 0
2
votes
0
replies
583
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bioNeuro plot_expression_profile - how to order samples in plot output
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2.2 years ago Christopher ▴ 20
0
votes
0
replies
749
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Dual species RNA-seq, Library size and normalization
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2.2 years ago Florian • 0
0
votes
0
replies
1.0k
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Pysam pileup and Rsamtools pileup output discrepancy
Pysam pileup Rsamtools RNASeq
2.2 years ago Xinqi • 0
0
votes
0
replies
918
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Using DADA2 for finding viral sequence variants
VariantDetection dada2 RNASeq
2.2 years ago Sara • 0
0
votes
0
replies
728
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How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
2.2 years ago mailtoshivam13 • 0
0
votes
0
replies
893
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clusterProfiler code to GO enrichment analysis seems to be incomplete
clusterProfiler DifferentialExpression
2.2 years ago nromerov • 0
0
votes
1
reply
1.1k
views
Subsetting cells from a single cell experiment
SingleCellExperiment
written 2.2 years ago by • 0
0
votes
0
replies
586
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loadstudy and cBioDataPack return error in vroom_
cBioPortalData
2.2 years ago karam • 0
0
votes
0
replies
978
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DiffBind dba.count() crash/can't finish problems
dba.count DiffBind ATACSeq
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
votes
1
reply
841
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Gene names from Matrix
BioCor StarBioTrek MatrixGenerics
updated 20 months ago by ▴ 760 • written 2.2 years ago by • 0
0
votes
2
replies
981
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bug in block.plsda from mixOmics?
mixOmics
2.2 years ago Lluís Revilla Sancho ▴ 760
1,000 results • Page 9 of 20
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I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
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Limma-voom sample weights and impact on DEG numbers
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