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News:
Bioconductor 3.18 is Released!
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written 15 months ago by
shepherl
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News:
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9 months ago
shepherl
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19 months ago • updated 10 months ago
shepherl
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updated 3 months ago by
Gordon Smyth
52k • written 5 months ago by
shepherl
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kevin.rue
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News:
[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
spatialLIBD
News
written 5.0 years ago by
Leonardo Collado Torres
★ 1.1k
2
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News:
Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025
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5 months ago
Maria Doyle
▴ 100
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Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
Asia
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written 2.3 years ago by
Peter Hickey
▴ 750
1
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0
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604
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News:
Bioconductor 3.20 is Released!
Bioconductor
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3 months ago
shepherl
4.1k
1
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0
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548
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News:
Nominations for Bioconductor Awards 2024!
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Bioc2024
11 months ago
shepherl
4.1k
1
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555
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News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
9 months ago
Aleena
▴ 30
1
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0
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575
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News:
Bioconductor Package Download Rate Limitation (HTTP 429)
downloads
http429
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Bioconductor
6 months ago
shepherl
4.1k
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683
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News:
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10 months ago • updated 9 months ago
shepherl
4.1k
1
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2
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1.3k
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News:
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Bioc2022
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written 2.9 years ago by
shepherl
4.1k
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Bioconductor Course, Kenya 2025: Applications Open!
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15 days ago
Maria Doyle
▴ 100
0
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2
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784
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News:
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BioC2024
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written 11 months ago by
Maria Doyle
▴ 100
0
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0
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176
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News:
RNAseq data analysis with R/Bioconductor (4-15 November)
DESeq2
GenomicRanges
3 months ago
info
▴ 10
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11
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1.7k
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News:
List of Deprecated Packages for Bioc3.19
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11 months ago • updated 3 months ago
shepherl
4.1k
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4
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1.7k
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News:
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written 2.3 years ago by
Maria Doyle
▴ 100
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426
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News:
BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
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8 months ago
Maria Doyle
▴ 100
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328
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Legacy Bioconductor Installation
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Bioconductor
8 months ago
shepherl
4.1k
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457
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Services
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written 11 months ago by
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346
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AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
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8 months ago • updated 7 months ago
shepherl
4.1k
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381
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News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology
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Network
8 months ago
info
▴ 10
0
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489
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News:
Deadline Extended - BioC2024 Abstracts and Sticker Contest - April 1st!
BioC2024
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10 months ago
Maria Doyle
▴ 100
0
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3
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1.2k
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presentation
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written 22 months ago by
Maria Doyle
▴ 100
0
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0
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360
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News:
Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing
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10 months ago
communication
• 0
0
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202
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News:
Single-cell RNA-seq analysis with R/Bioconductor (online course)
SingleCellExperiment
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4 months ago
info
▴ 10
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273
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News:
RNAseq data analysis with Bioconductor (online course)
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SummarizedExperiment
4 months ago • updated 3 months ago
info
▴ 10
0
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13
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News:
GBCC2025 Abstract Submissions & Registration Now Open!
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1 day ago
Maria Doyle
▴ 100
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0
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17
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Spam:
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4 months ago
Lisandro Hermoso
0
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534
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News:
Important Release 3.18 Freeze Announcment
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Bioconductor
Bioconducto
10 months ago
shepherl
4.1k
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0
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321
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News:
Metabolomics with R/Bioconductor Online Course
metabomxtr
MetaboCoreUtils
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5 months ago
info
▴ 10
0
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1
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775
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News:
EuroBioC2023 abstract submission is open!
presentation
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updated 4 months ago by
Finnianfly
• 0 • written 23 months ago by
Maria Doyle
▴ 100
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1.1k
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News:
Bioconductor 3.19 Release Schedule
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release
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11 months ago • updated 10 months ago
shepherl
4.1k
0
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0
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344
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News:
EuroBioC2024 Carpentries workshops Sep 2-3
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Workshop
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EuroBioC2024
7 months ago
Maria Doyle
▴ 100
0
votes
5
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1.2k
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News:
EuroBioC2024 abstract submission is open!
Conference
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EuroBioC2024
updated 6 weeks ago by
Alan Downey
• 0 • written 12 months ago by
Maria Doyle
▴ 100
0
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9
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Spam:
Small Business Directory Emerald Coast
BUScorrect
offtopic
updated 9 weeks ago by
shepherl
4.1k • written 9 weeks ago by
2zrcj3448p
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399
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TIDES USA 2024
flowBeads
10 months ago
bocsci11
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373
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News:
Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
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MoleculeExperiment
9 months ago
info
▴ 10
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251
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News:
Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries
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Bioconductor
4 months ago
Maria Doyle
▴ 100
0
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0
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354
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News:
EuroBioC Updates: Important Deadlines
Conference
EuroBioC2024
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EuroBioC
6 months ago
Maria Doyle
▴ 100
0
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0
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563
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News:
BioC2024 registration is now open!
BioC2024
Conference
Bioconductor
Community
11 months ago
Maria Doyle
▴ 100
0
votes
1
reply
432
views
News:
BioCAsia 2024 Registration Now Open!
BioCAsia2024
Conference
Community
Bioconductor
5 months ago
Maria Doyle
▴ 100
0
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0
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231
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News:
Announcing the GBCC2025 Logo Design Contest!
Conference
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Galaxy
GBCC2025
Bioconductor
3 months ago
Maria Doyle
▴ 100
0
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1
reply
529
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News:
Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics
xcms
updated 4 months ago by
Harry
• 0 • written 4 months ago by
info
▴ 10
0
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0
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225
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News:
List of Deprecated Packages for Bioc3.20
Devel
Bioconductor
Release
3 months ago
shepherl
4.1k
0
votes
0
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493
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News:
Online course: Mass Spectrometry and Proteomics with R/Bioconductor
MSnbase
11 months ago
info
▴ 10
0
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380
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News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
9 months ago
Maria Doyle
▴ 100
64 results • Page
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Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Comment: p-value the same for different contrasts DESeq2
by
caroline.zanchi
• 0
It would be great if it were possible to do something similar using GlmGamPoi !
Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Votes
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
A: Rtracklayer fails to export TxDb as GFF3 without CDS
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