Showing : AnnotationForge • reset
3
votes
7
replies
700
views
makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows:
AnnotationForge
updated 3 months ago by 68k • written 3 months ago by • 0
5
votes
13
replies
2.4k
views
Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
12 months ago KABILAN • 0
2
votes
2
replies
562
views
SAS token for Annotation package
AnnotationDbi AnnotationForge
13 months ago KABILAN • 0
0
votes
3
replies
1.5k
views
makeOrgPackageFromGAF() error with gene ID "GID"
AnnotationHub AnnotationDbi AnnotationForge
15 months ago Anna • 0
4
votes
14
replies
2.6k
views
Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() from AnnotationForge
OrganismDb AnnotationForge
17 months ago Ozan • 0
1
vote
2
replies
957
views
Erroe when using makeOrgPackageFromNCBI()
AnnotationForge
18 months ago Patadù ▴ 20
1
vote
8
replies
1.5k
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
updated 13 months ago by 68k • written 19 months ago by • 0
2
votes
28
replies
7.1k
views
Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and annotation forge
AnnotationHub AnnotationForge Pseudomonas_aeruginosa
updated 23 months ago by 68k • written 2.9 years ago by ▴ 10
2
votes
4
replies
1.4k
views
Question about creating custom organism database with AnnotationForge
AnnotationForge
2.1 years ago Adrian • 0
2
votes
5
replies
1.8k
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI
updated 2.1 years ago by 68k • written 2.1 years ago by ▴ 80
4
votes
6
replies
2.0k
views
Query regarding to create custom organism database with AnnotationForge package (AnnotationForge::makeOrgPackageFromNCBI)
AnnotationForge OrganismData OrganismDb
2.4 years ago abhisek001 • 0
0
votes
1
reply
2.6k
views
Error in .testForValidKeys(x, keys, keytype, fks)
clusterProfiler AnnotationForge
updated 2.6 years ago by 4.2k • written 2.6 years ago by • 0
1
vote
15
replies
3.9k
views
AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
AnnotationForge
2.8 years ago • updated 2.7 years ago Mistinrain ▴ 10
0
votes
1
reply
921
views
AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
AnnotationForge
updated 2.8 years ago by • 0 • written 2.8 years ago by ▴ 10
1
vote
1
reply
1.0k
views
AnnotationForge::makeOrgPackage "argument is missing, with no default" Errors
AnnotationForge
2.8 years ago Mistinrain ▴ 10
0
votes
3
replies
1.4k
views
How to handle multiple assay versions in a ChipDb annotation package
ChipDb AnnotationDbi AnnotationForge
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
2
replies
5.1k
views
Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI()
biomaRt AnnotationForge
3.5 years ago Lan Anh • 0
3
votes
8
replies
4.2k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData AnnotationForge
3.6 years ago Saber_J ▴ 10
4
votes
2
replies
6.4k
views
Install package without updating dependent package
Install AnnotationForge
3.9 years ago 亮 • 0
0
votes
7
replies
6.7k
views
how to create an OrgDb package?
orgDb annotationForge
updated 3.6 years ago by • 0 • written 4.1 years ago by ▴ 20
1
vote
5
replies
2.3k
views
Gene ID conversion for pathway enrichment analysis of differentially expressed genes
GeneIDConversion AnnotationForge
updated 4.6 years ago by ★ 4.1k • written 4.6 years ago by • 0
0
votes
3
replies
1.9k
views
AnnotationForge: makeOrgPackageFromNCBI Error in function (type, msg, asError = TRUE) : FTP response timeout
AnnotationForge
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
2
votes
4
replies
1.5k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
4
votes
5
replies
2.7k
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 5.5 years ago by 68k • written 5.5 years ago by • 0
3
votes
3
replies
1.3k
views
AnnotationForge run by three days and do not end
annotation AnnotationForge
5.5 years ago Marcelo Laia ▴ 450
1
vote
1
reply
2.2k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
0
votes
4
replies
1.7k
views
AnnotationForge not working for building custom org packages
AnnotationForge Marc Carlson Hervé Pagès
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
5
votes
7
replies
2.8k
views
Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis
updated 2.6 years ago by ▴ 50 • written 5.7 years ago by ▴ 20
0
votes
2
replies
2.0k
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge makeOrgPackageFromNCBI
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
0
votes
2
replies
1.2k
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
0
replies
1.5k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
6.7 years ago psutton • 0
0
votes
7
replies
2.7k
views
go_bp table in custom OrgDb package
annotation go pcaExplorer AnnotationForge
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
1
vote
7
replies
2.1k
views
Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
1
vote
3
replies
1.6k
views
makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge
updated 7.3 years ago by 68k • written 7.3 years ago by • 0
1
vote
3
replies
1.8k
views
Running GO analysis via Prostar
prostar proteomics rforproteomics annotationforge
updated 7.5 years ago by ▴ 10 • written 7.5 years ago by ▴ 20
2
votes
2
replies
1.6k
views
Queries around makeOrgPackageFromNCBI
R software error annotationforge
updated 7.5 years ago by ★ 4.1k • written 7.5 years ago by • 0
0
votes
1
reply
1.8k
views
AnnotationForge, RNAseq, and non-model organism
AnnotationForge annotationforge nonmodel rnaseq
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
2
votes
3
replies
2.3k
views
custom annotation for GO enrichment
annotationforge GSEA clusterprofiler GO annotation
8.3 years ago cabezasdelafuented ▴ 10
0
votes
10
replies
2.1k
views
Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi
8.3 years ago gabciamm • 0
0
votes
1
reply
2.3k
views
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge makeorgpackage
8.4 years ago marisa.e.miller • 0
3
votes
7
replies
3.9k
views
makeOrgPackage in AnnotationForge "GID" problem
annotationforge
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
votes
0
replies
1.5k
views
create custom 'System Biology' annotation package - class not found
AnnotationDb annotationdbi AnnotationForge
8.7 years ago Laure Cougnaud ▴ 20
3
votes
6
replies
3.3k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
8.8 years ago MOD • 0
0
votes
14
replies
6.2k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
8.8 years ago • updated 3.2 years ago Jenny Drnevich ★ 2.0k
1
vote
22
replies
6.3k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor R annotationforge
updated 8.9 years ago by ▴ 10 • written 9.3 years ago by • 0
0
votes
3
replies
1.9k
views
error while making database using Annotationforge package
annotationforge error database
updated 9.3 years ago by ★ 4.1k • written 9.3 years ago by ▴ 10
5
votes
22
replies
6.8k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor annotationforge annotationdbi annotation r
updated 9.3 years ago by ★ 1.1k • written 10.7 years ago by • 0
1
vote
4
replies
3.3k
views
AnnotationForge failed due to "Parameter 0 does not have length 1"
AnnotationForge
updated 9.8 years ago by ★ 6.8k • written 9.8 years ago by • 0
0
votes
1
reply
1.4k
views
errors for makeOrgPackageFromNCBI in AnnotationForge
AnnotationForge
updated 9.9 years ago by 16k • written 10.0 years ago by • 0
0
votes
2
replies
2.1k
views
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation annotationforge
updated 10.0 years ago by 25k • written 10.0 years ago by • 0
64 results • Page 1 of 2
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Scholar to James W. MacDonald 68k
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