Showing : AnnotationForge • reset
0
votes
8
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275
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData AnnotationForge
29 days ago • updated 26 days ago Saber_J • 0
3
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2
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773
views
Install package without updating dependent package
Install AnnotationForge
5 months ago 亮 • 0
0
votes
7
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587
views
how to create an OrgDb package?
orgDb annotationForge
updated 5 weeks ago by • 0 • written 7 months ago by • 0
1
vote
5
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496
views
Gene ID conversion for pathway enrichment analysis of differentially expressed genes
GeneIDConversion AnnotationForge
updated 13 months ago by ★ 3.2k • written 14 months ago by • 0
0
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3
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413
views
AnnotationForge: makeOrgPackageFromNCBI Error in function (type, msg, asError = TRUE) : FTP response timeout
AnnotationForge
updated 14 months ago by 3.5k • written 14 months ago by • 0
2
votes
4
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355
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 2.0 years ago by 59k • written 2.0 years ago by • 0
4
votes
5
replies
768
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 2.0 years ago by 59k • written 2.0 years ago by • 0
3
votes
3
replies
244
views
AnnotationForge run by three days and do not end
annotation AnnotationForge
2.1 years ago Marcelo Laia ▴ 450
1
vote
1
reply
531
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 2.1 years ago by 3.5k • written 2.1 years ago by • 0
0
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4
replies
288
views
AnnotationForge not working for building custom org packages
AnnotationForge Marc Carlson Hervé Pagès
updated 2.1 years ago by 59k • written 2.1 years ago by • 0
0
votes
6
replies
355
views
Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis
updated 2.2 years ago by 59k • written 2.2 years ago by • 0
0
votes
2
replies
347
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge makeOrgPackageFromNCBI
updated 2.3 years ago by 59k • written 2.3 years ago by • 0
0
votes
2
replies
268
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 2.3 years ago by 59k • written 2.3 years ago by • 0
0
votes
0
replies
544
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
3.2 years ago psutton • 0
0
votes
7
replies
850
views
go_bp table in custom OrgDb package
annotation go pcaExplorer AnnotationForge
updated 3.2 years ago by 59k • written 3.2 years ago by • 0
1
vote
7
replies
628
views
Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge
updated 3.7 years ago by 59k • written 3.7 years ago by • 0
1
vote
3
replies
632
views
makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge
updated 3.8 years ago by 59k • written 3.8 years ago by • 0
1
vote
3
replies
807
views
Running GO analysis via Prostar
prostar proteomics rforproteomics annotationforge
updated 4.0 years ago by ▴ 10 • written 4.0 years ago by ▴ 20
2
votes
2
replies
601
views
Queries around makeOrgPackageFromNCBI
R software error annotationforge
updated 4.1 years ago by ★ 3.2k • written 4.1 years ago by • 0
0
votes
1
reply
765
views
AnnotationForge, RNAseq, and non-model organism
AnnotationForge annotationforge nonmodel rnaseq
updated 4.4 years ago by 59k • written 4.4 years ago by • 0
2
votes
3
replies
1.2k
views
custom annotation for GO enrichment
annotationforge GSEA clusterprofiler GO annotation
4.8 years ago cabezasdelafuented ▴ 10
0
votes
10
replies
793
views
Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi
4.9 years ago • updated 4.8 years ago gabciamm • 0
0
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1
reply
1.2k
views
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge makeorgpackage
4.9 years ago marisa.e.miller • 0
3
votes
7
replies
1.4k
views
makeOrgPackage in AnnotationForge "GID" problem
annotationforge
updated 5.1 years ago by 59k • written 5.1 years ago by • 0
0
votes
0
replies
744
views
create custom 'System Biology' annotation package - class not found
AnnotationDb annotationdbi AnnotationForge
5.3 years ago Laure Cougnaud ▴ 20
3
votes
6
replies
1.8k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
5.3 years ago MOD • 0
0
votes
12
replies
2.7k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
updated 5.3 years ago by ★ 6.7k • written 5.3 years ago by ★ 2.0k
1
vote
22
replies
2.8k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor R annotationforge
updated 5.4 years ago by ▴ 10 • written 5.8 years ago by • 0
0
votes
3
replies
734
views
error while making database using Annotationforge package
annotationforge error database
updated 5.8 years ago by ★ 3.2k • written 5.8 years ago by ▴ 10
5
votes
22
replies
4.3k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor annotationforge annotationdbi annotation r
updated 5.8 years ago by ▴ 990 • written 7.3 years ago by • 0
1
vote
4
replies
1.8k
views
AnnotationForge failed due to "Parameter 0 does not have length 1"
AnnotationForge
updated 6.4 years ago by ★ 6.7k • written 6.4 years ago by • 0
0
votes
1
reply
699
views
errors for makeOrgPackageFromNCBI in AnnotationForge
AnnotationForge
updated 6.5 years ago by 15k • written 6.5 years ago by • 0
0
votes
2
replies
1.0k
views
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation annotationforge
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
0
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2
replies
819
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge makeorgpackage go
6.9 years ago Keith Hughitt ▴ 150
0
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5
replies
1.4k
views
Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
7.3 years ago oliver.tills • 0
0
votes
4
replies
1.7k
views
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 7.6 years ago by ★ 7.2k • written 7.7 years ago by ★ 3.7k
1
vote
2
replies
1.4k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb annotationdbi annotationforge
updated 7.7 years ago by ★ 7.2k • written 7.7 years ago by ▴ 80
3
votes
9
replies
1.9k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles AnnotationForge Bimap GO
7.7 years ago artur ▴ 80
3
votes
3
replies
6.9k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge Annotation GO
updated 7.7 years ago by ★ 7.2k • written 7.7 years ago by ▴ 80
0
votes
0
replies
804
views
Failure to Install Organism Package from AnnotationForge
Organism AnnotationDbi AnnotationForge Organism AnnotationDbi AnnotationForge
8.3 years ago Guest User ★ 12k
1
vote
1
reply
1.5k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 8.6 years ago by 59k • written 8.6 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Error using makeDBPackage() from AnnotationForge package
Annotation probe AnnotationForge Annotation probe AnnotationForge
updated 8.7 years ago by ★ 7.2k • written 8.7 years ago by ▴ 80
1
vote
3
replies
1.1k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 8.7 years ago by ★ 7.2k • written 8.8 years ago by ▴ 220
0
votes
1
reply
751
views
答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
8.8 years ago joseph ▴ 40
0
votes
1
reply
699
views
an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 8.8 years ago by ★ 7.2k • written 8.8 years ago by ▴ 40
0
votes
1
reply
1.2k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 8.9 years ago by 59k • written 8.9 years ago by ▴ 90
0
votes
12
replies
3.1k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge
9.3 years ago James W. MacDonald 59k
47 results • Page 1 of 1
Recent ...
Replies
Comment: regression analysis for epic array methylation data using limma by nabiyogesh ▴ 10
Dear Basti, thank you so much! Could you please also help me how to arrange samples in the same order in rows (targests2) and columns in (…
Comment: How to figure out the FC value from Limma by ATpoint ★ 1.2k
You probably have opened that file in Excel before. Get it again directly from GEO2R, or even better take the R script GEO2R offers and run…
Comment: regression analysis for epic array methylation data using limma by Basti ▴ 280
The columns of your design matrix `var` corresponds to the coefficients that are fitted by limma. If you check your design matrix, you will…
Comment: How to figure out the FC value from Limma by beslinail • 0
I tried to FC column to dbl from chr. But FC colomn is changed by NA genlist_filter <- read_csv(file = "AD_control5.csv") gen…
Comment: WGCNA: correlations module-traits, and module membership-gene significance by annamariabugaj ▴ 10
Hello, sorry for my late response. this is the heatmap: https://drive.google.com/file/d/165fizcsWcA2uzRPVV2cKNPOcqM1d2WfG/view?usp=sharing…
Votes
Answer: Limma for paired and unpaired samples. Strange number of DEGs in unpaired sample
A: Very low EdgeR Pvalues with very small sample size
A: Very low EdgeR Pvalues with very small sample size
Comment: Question on RNA-Seq single sample data analysis in EdgeR
Answer: Question on RNA-Seq single sample data analysis in EdgeR
Awards • All
Centurion to Basti ▴ 280
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