Bioconductor Bioclite

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bioclite

10.0 years ago David.Duffy ▴ 10

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bioclite gcc install fedora

updated 10.0 years ago by Martin Morgan 25k • written 10.0 years ago by Knut Hansen ▴ 20

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Bioconductor biocLite R packages oldversion

10.1 years ago svlachavas ▴ 840

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goseq geneLenDataBase bioclite rstudio

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by amyfm ▴ 10

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opencyto bioclite

updated 10.1 years ago by yang.chen • 0 • written 10.1 years ago by pavitrarc ▴ 20

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6.5k

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biocinstaller bioclite

updated 10.1 years ago by Dan Tenenbaum ★ 8.2k • written 10.1 years ago by Stephanie M. Gogarten ▴ 890

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2.1k

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package installation custom library path biocLite bioconductor

10.2 years ago svlachavas ▴ 840

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1.9k

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edger bioclite installation

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by lplough • 0

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1.9k

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graphite bioclite

10.5 years ago mhlinder • 0

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2.7k

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bioclite package updates

updated 10.5 years ago by Dan Tenenbaum ★ 8.2k • written 10.5 years ago by carol white ▴ 680

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1.9k

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software error bioclite

updated 10.5 years ago by Dan Tenenbaum ★ 8.2k • written 10.5 years ago by Will Landau • 0

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software error factomineR bioclite

updated 10.6 years ago by Martin Morgan 25k • written 10.6 years ago by dany_wm44 • 0

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GO.db bioclite

10.6 years ago Steve Pederson ▴ 170

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5.0k

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biocLite biocinstaller

10.6 years ago thomas.mohr ▴ 20

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1.9k

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bioclite

10.7 years ago melanie.shook • 0

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8.5k

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bioclite package updates

updated 10.7 years ago by Dan Tenenbaum ★ 8.2k • written 10.7 years ago by Jenny Drnevich ★ 2.0k

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2.2k

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bioclite

11.0 years ago Robert Baer ▴ 70

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2.2k

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bioclite biocinstaller biocupgrade

updated 11.1 years ago by Dan Tenenbaum ★ 8.2k • written 11.1 years ago by Simon Coetzee ▴ 50

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rtracklayer genomicranges bioclite

updated 11.1 years ago by Marc Carlson ★ 7.2k • written 11.1 years ago by Janet Young ▴ 740

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6.0k

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update bioclite

updated 11.1 years ago by Dan Tenenbaum ★ 8.2k • written 11.1 years ago by dianmante • 0

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1.6k

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biocLite installation

updated 11.2 years ago by Martin Morgan 25k • written 11.2 years ago by sara.m79 • 0

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1.6k

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usedevel bioclite

updated 11.2 years ago by Steve Lianoglou ★ 13k • written 11.2 years ago by skm770 • 0

72 results • Page 2 of 2

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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130