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Bioconductor
•
reset
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 28 days ago
shepherl
3.9k
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 6 months ago by
shepherl
3.9k • written 20 months ago by
Florian Finkernagel
▴ 30
0
votes
4
replies
755
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor
Transcriptomics
DifferentialExpression
DESeq2
11 months ago
sreeshmaraj72
• 0
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 9 months ago by
Mehdi
• 0 • written 17 months ago by
k.wickstrom
• 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor
merge data frames
combine
biocgenerics
8.5 years ago • updated 6 months ago
Konstantinos Yeles
▴ 80
0
votes
18
replies
2.6k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.2 years ago by
lea
• 0
0
votes
2
replies
186
views
bioconductor emailing list
Bioconductor
updated 7 weeks ago by
shepherl
3.9k • written 7 weeks ago by
1427972815
• 0
1
vote
2
replies
679
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Ashton
▴ 10
0
votes
5
replies
9.3k
views
tximport all(file.exists(files)) is not TRUE
bioconductor
tximport
rnaseq
R
updated 8 weeks ago by
Eva
• 0 • written 7.6 years ago by
ctl
• 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.3 years ago by
chandlerjd58
▴ 10
0
votes
2
replies
900
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
13 months ago • updated 11 months ago
shepherl
3.9k
5
votes
18
replies
7.6k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 4 months ago by
picasa1983
• 0 • written 2.3 years ago by
Victor
• 0
6
votes
11
replies
1.1k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago • updated 12 weeks ago
gernophil
• 0
2
votes
5
replies
1.4k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR
RNASeq
RNASeqData
Bioconductor
written 14 months ago by
Rebekah
• 0
0
votes
1
reply
477
views
BiocManager Package installs
Bioconductor
updated 11 months ago by
shepherl
3.9k • written 11 months ago by
joseph.cerra
• 0
0
votes
1
reply
94
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 8 days ago by
shepherl
3.9k • written 8 days ago by
cyril.dalmasso
• 0
2
votes
4
replies
656
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 6 months ago by
shepherl
3.9k • written 6 months ago by
lavanilla44
• 0
1
vote
4
replies
780
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
9 months ago • updated 8 months ago
patrick.turko
• 0
0
votes
1
reply
212
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment
datalimit
Bioconductor
updated 3 months ago by
Hervé Pagès
16k • written 3 months ago by
Xin Wang
• 0
0
votes
4
replies
787
views
Bioconductor installation
Bioconductor
written 4 months ago by
Akhil
• 0
0
votes
2
replies
811
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
written 8 months ago by
Gordon Smyth
50k
0
votes
1
reply
416
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor
netboost
updated 8 months ago by
ATpoint
★ 4.1k • written 8 months ago by
laura1_z
• 0
1
vote
4
replies
88
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
updated 41 minutes ago by
Marcel Ramos
690 • written 5 hours ago by
Patadù
▴ 10
1
vote
5
replies
508
views
Can't post a question containing code?
Bioconductor
updated 5 days ago by
NATASHA
• 0 • written 3 months ago by
DS
▴ 10
5
votes
2
replies
783
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
7 months ago
Federico
▴ 10
0
votes
1
reply
254
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 3 months ago by
Lluís Revilla Sancho
▴ 730 • written 3 months ago by
vanbelj
▴ 30
0
votes
2
replies
670
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
nilanjanamani88
• 0
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.2 years ago by
tanya
• 0
0
votes
1
reply
3.6k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Aytaç
• 0
0
votes
2
replies
959
views
MACS2 not installing
Bioconductor
8 months ago
alia.sinqua
• 0
0
votes
8
replies
8.7k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 5 months ago by
Marcel Ramos
690 • written 2.8 years ago by
charlotte
▴ 10
0
votes
6
replies
2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 5 months ago by
ATpoint
★ 4.1k • written 17 months ago by
laujihen
• 0
0
votes
1
reply
492
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression
Bioconductor
GEOquery
MethylationArrayData
9 months ago
Arianna
• 0
0
votes
2
replies
1.4k
views
Conducting pair-wise comparison in DESeq2?
DESeq2
deseq2
biocondu
Bioconductor
RNASeq
written 15 months ago by
Hussain
• 0
4
votes
3
replies
350
views
Bioconductor code browser time out
Bioconductor
updated 4 months ago by
Mike Smith
★ 6.5k • written 4 months ago by
Marek Gierlinski
▴ 30
0
votes
2
replies
2.5k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago
Avner
• 0
2
votes
11
replies
958
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by
Guido Hooiveld
★ 4.0k • written 7 months ago by
cinzia.spagnoli
• 0
2
votes
1
reply
868
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
ningyuan
• 0
5
votes
1
reply
456
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.9k
1
vote
2
replies
271
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
9 weeks ago
thomas
• 0
0
votes
2
replies
925
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.2 years ago by
araaaju
• 0
0
votes
0
replies
190
views
News:
BioC2024 registration is now open!
BioC2024
Conference
Bioconductor
Community
10 weeks ago
Maria Doyle
▴ 70
4
votes
0
replies
127
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
14 days ago
shepherl
3.9k
2
votes
2
replies
325
views
How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by
Hervé Pagès
16k • written 3 months ago by
Marek Gierlinski
▴ 30
1
vote
0
replies
305
views
News:
Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 1 day ago
shepherl
3.9k
0
votes
0
replies
553
views
News:
Bioconductor Community Engagement, Outreach, and Diversity Award
Awards
Bioconductor
Bioc2023
Recognition
12 months ago • updated 11 months ago
shepherl
3.9k
0
votes
0
replies
476
views
News:
Bioconductor.org website new design - We Need Your Input!
Bioconductor
Community
Website
9 months ago
Maria Doyle
▴ 70
0
votes
1
reply
630
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 10 months ago by
Mike Smith
★ 6.5k • written 10 months ago by
Catia
• 0
3
votes
5
replies
1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 10 months ago by
Vincent J. Carey, Jr.
6.7k • written 10 months ago by
Ndimensional
▴ 20
1
vote
1
reply
719
views
News:
Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor
CAB
bioconductoroversight
community
written 17 months ago by
shepherl
3.9k
50 results • Page
1 of 1
Recent ...
Replies
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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