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Bioconductor
•
reset
0
votes
18
replies
2.6k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.2 years ago by
lea
• 0
5
votes
18
replies
7.6k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 5 months ago by
picasa1983
• 0 • written 2.3 years ago by
Victor
• 0
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 4 weeks ago
shepherl
3.9k
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 9 months ago by
Mehdi
• 0 • written 17 months ago by
k.wickstrom
• 0
2
votes
11
replies
976
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by
Guido Hooiveld
★ 4.0k • written 7 months ago by
cinzia.spagnoli
• 0
6
votes
11
replies
1.1k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago
gernophil
• 0
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 6 months ago by
shepherl
3.9k • written 20 months ago by
Florian Finkernagel
▴ 30
0
votes
8
replies
8.7k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 5 months ago by
Marcel Ramos
700 • written 2.8 years ago by
charlotte
▴ 10
0
votes
7
replies
441
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
7 weeks ago • updated 6 weeks ago
needNGS
• 0
0
votes
6
replies
2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 6 months ago by
ATpoint
★ 4.1k • written 17 months ago by
laujihen
• 0
0
votes
6
replies
857
views
Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
11 months ago
simone.tiberi
• 0
1
vote
5
replies
520
views
Can't post a question containing code?
Bioconductor
updated 9 days ago by
NATASHA
• 0 • written 3 months ago by
DS
▴ 10
3
votes
5
replies
1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 10 months ago by
Vincent J. Carey, Jr.
6.7k • written 10 months ago by
Ndimensional
▴ 20
2
votes
5
replies
1.4k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR
RNASeq
RNASeqData
Bioconductor
written 14 months ago by
Rebekah
• 0
0
votes
5
replies
1.0k
views
What to whitelist in Firewall to allow downloading packages
Bioconductor
NetworkInference
updated 10 months ago by
shepherl
3.9k • written 10 months ago by
Albert
• 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.3 years ago by
chandlerjd58
▴ 10
2
votes
5
replies
219
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
4 days ago • updated 2 days ago
Patadù
▴ 10
0
votes
5
replies
9.3k
views
tximport all(file.exists(files)) is not TRUE
bioconductor
tximport
rnaseq
R
updated 8 weeks ago by
Eva
• 0 • written 7.6 years ago by
ctl
• 0
0
votes
4
replies
758
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor
Transcriptomics
DifferentialExpression
DESeq2
12 months ago
sreeshmaraj72
• 0
1
vote
4
replies
793
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
9 months ago
patrick.turko
• 0
0
votes
4
replies
813
views
Bioconductor installation
Bioconductor
written 4 months ago by
Akhil
• 0
2
votes
4
replies
667
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 6 months ago by
shepherl
3.9k • written 6 months ago by
lavanilla44
• 0
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 3 months ago by
Gordon Smyth
50k • written 4.8 years ago by
sambunga094
• 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor
merge data frames
combine
biocgenerics
8.5 years ago • updated 6 months ago
Konstantinos Yeles
▴ 80
4
votes
3
replies
359
views
Bioconductor code browser time out
Bioconductor
updated 4 months ago by
Mike Smith
★ 6.5k • written 4 months ago by
Marek Gierlinski
▴ 30
0
votes
3
replies
584
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor
BiocPkgTools
6 months ago
blessybo
• 0
0
votes
3
replies
1.7k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.2 years ago by
tanya
• 0
2
votes
2
replies
333
views
How to contact Bioconductor's test host?
Bioconductor
updated 4 months ago by
Hervé Pagès
16k • written 4 months ago by
Marek Gierlinski
▴ 30
0
votes
2
replies
930
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.3 years ago by
araaaju
• 0
0
votes
2
replies
910
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
13 months ago • updated 11 months ago
shepherl
3.9k
1
vote
2
replies
690
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Ashton
▴ 10
0
votes
2
replies
193
views
bioconductor emailing list
Bioconductor
updated 7 weeks ago by
shepherl
3.9k • written 7 weeks ago by
1427972815
• 0
0
votes
2
replies
685
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor
clusterProfiler
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
nilanjanamani88
• 0
0
votes
2
replies
984
views
MACS2 not installing
Bioconductor
8 months ago
alia.sinqua
• 0
0
votes
2
replies
1.4k
views
Conducting pair-wise comparison in DESeq2?
DESeq2
deseq2
biocondu
Bioconductor
RNASeq
written 15 months ago by
Hussain
• 0
0
votes
2
replies
2.5k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago
Avner
• 0
1
vote
2
replies
280
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
10 weeks ago
thomas
• 0
0
votes
2
replies
1.2k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by
Manuel
• 0 • written 8 months ago by
xlu.cpu
• 0
0
votes
2
replies
820
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
written 8 months ago by
Gordon Smyth
50k
5
votes
2
replies
799
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
7 months ago
Federico
▴ 10
0
votes
1
reply
330
views
News:
BioC2024 abstract submission is open!
BioC2024
Conference
Bioconductor
updated 8 weeks ago by
howell
• 0 • written 3 months ago by
Maria Doyle
▴ 70
2
votes
1
reply
879
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
ningyuan
• 0
0
votes
1
reply
217
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment
datalimit
Bioconductor
updated 3 months ago by
Hervé Pagès
16k • written 3 months ago by
Xin Wang
• 0
5
votes
1
reply
464
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.9k
0
votes
1
reply
268
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 3 months ago by
Lluís Revilla Sancho
▴ 730 • written 3 months ago by
vanbelj
▴ 30
0
votes
1
reply
644
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 10 months ago by
Mike Smith
★ 6.5k • written 10 months ago by
Catia
• 0
0
votes
1
reply
1.2k
views
News:
BioC2023 abstract submission is now open!
presentation
BioC2023
Conference
community
Bioconductor
written 15 months ago by
Maria Doyle
▴ 70
3
votes
1
reply
341
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 4 months ago by
shepherl
3.9k
2
votes
1
reply
296
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 3 months ago by
Lori
• 0 • written 4 months ago by
shepherl
3.9k
0
votes
1
reply
496
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression
Bioconductor
GEOquery
MethylationArrayData
10 months ago
Arianna
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
jane
• 0
Your material was totally correct, therefore I was able to learn what I needed to know. I'd want to convey my heartfelt gratitude for shari…
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
Galina
• 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
robersy
• 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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