Showing : Bioconductor • reset
0
votes
18
replies
2.5k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.2 years ago by • 0
5
votes
18
replies
7.5k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 4 months ago by • 0 • written 2.3 years ago by • 0
3
votes
18
replies
2.9k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 18 days ago shepherl 3.9k
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 9 months ago by • 0 • written 16 months ago by • 0
2
votes
11
replies
937
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 12 weeks ago by ★ 3.9k • written 7 months ago by • 0
6
votes
11
replies
992
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago • updated 11 weeks ago gernophil • 0
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive bioconductor
updated 6 months ago by 3.9k • written 19 months ago by ▴ 30
0
votes
8
replies
8.6k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 690 • written 2.8 years ago by ▴ 10
0
votes
7
replies
401
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
5 weeks ago • updated 4 weeks ago needNGS • 0
0
votes
6
replies
2.1k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.1k • written 17 months ago by • 0
0
votes
6
replies
838
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
11 months ago • updated 10 months ago simone.tiberi • 0
3
votes
5
replies
1.1k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 9 months ago by 6.7k • written 9 months ago by ▴ 20
0
votes
5
replies
980
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 9 months ago by 3.9k • written 10 months ago by • 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.2 years ago by ▴ 10
2
votes
5
replies
1.4k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 14 months ago by • 0
0
votes
5
replies
9.3k
views
tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 6 weeks ago by • 0 • written 7.6 years ago by • 0
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 11 weeks ago by 50k • written 4.8 years ago by • 0
1
vote
4
replies
763
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
8 months ago patrick.turko • 0
0
votes
4
replies
744
views
Bioconductor installation
Bioconductor
written 4 months ago by • 0
1
vote
4
replies
436
views
Can't post a question containing code?
Bioconductor
updated 11 weeks ago by ▴ 730 • written 12 weeks ago by ▴ 10
0
votes
4
replies
743
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
11 months ago sreeshmaraj72 • 0
2
votes
4
replies
625
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 5 months ago by 3.9k • written 6 months ago by • 0
0
votes
3
replies
555
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
6 months ago blessybo • 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 6 months ago Konstantinos Yeles ▴ 80
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
4
votes
3
replies
340
views
Bioconductor code browser time out
Bioconductor
updated 3 months ago by ★ 6.5k • written 3 months ago by ▴ 30
1
vote
2
replies
258
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
8 weeks ago thomas • 0
0
votes
2
replies
933
views
MACS2 not installing
Bioconductor
8 months ago alia.sinqua • 0
0
votes
2
replies
649
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
votes
2
replies
1.4k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 14 months ago by • 0
0
votes
2
replies
2.4k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago Avner • 0
2
votes
2
replies
311
views
How to contact Bioconductor's test host?
Bioconductor
updated 3 months ago by 16k • written 3 months ago by ▴ 30
5
votes
2
replies
757
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
0
votes
2
replies
878
views
News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
13 months ago • updated 11 months ago shepherl 3.9k
0
votes
2
replies
919
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.2 years ago by • 0
0
votes
2
replies
176
views
bioconductor emailing list
Bioconductor
updated 5 weeks ago by 3.9k • written 5 weeks ago by • 0
0
votes
2
replies
794
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
1
vote
2
replies
660
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 8 months ago by 65k • written 8 months ago by ▴ 10
0
votes
2
replies
1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by • 0 • written 7 months ago by • 0
0
votes
1
reply
1.2k
views
News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 15 months ago by ▴ 70
0
votes
1
reply
232
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 11 weeks ago by ▴ 730 • written 12 weeks ago by ▴ 30
0
votes
1
reply
609
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 9 months ago by ★ 6.5k • written 9 months ago by • 0
0
votes
1
reply
203
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 3 months ago by 16k • written 3 months ago by • 0
1
vote
1
reply
713
views
News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 16 months ago by 3.9k
0
votes
1
reply
869
views
Potential segfault bug in featureCounts using long read data
Bioconductor Rsubread featureCounts
updated 12 months ago by ★ 3.6k • written 12 months ago by • 0
2
votes
1
reply
281
views
News: "Edit" button not working
Bioconductor Website SupportSite
updated 3 months ago by • 0 • written 3 months ago by 3.9k
0
votes
1
reply
308
views
News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 6 weeks ago by • 0 • written 10 weeks ago by ▴ 70
0
votes
1
reply
340
views
Advice needed on package using online databases (fails CHECK when database is down)
Bioconductor
updated 6 months ago by 3.9k • written 6 months ago by ▴ 30
0
votes
1
reply
477
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
9 months ago Arianna • 0
0
votes
1
reply
3.5k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 7 months ago by 65k • written 7 months ago by • 0
50 results • Page 1 of 1
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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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