Showing : Bioconductor • reset
0
votes
18
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2.6k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.2 years ago by • 0
5
votes
18
replies
7.6k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 5 months ago by • 0 • written 2.3 years ago by • 0
3
votes
18
replies
3.0k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 4 weeks ago shepherl 3.9k
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 9 months ago by • 0 • written 17 months ago by • 0
2
votes
11
replies
972
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
6
votes
11
replies
1.1k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago gernophil • 0
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive bioconductor
updated 6 months ago by 3.9k • written 20 months ago by ▴ 30
0
votes
8
replies
8.7k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 700 • written 2.8 years ago by ▴ 10
0
votes
7
replies
440
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem
7 weeks ago • updated 6 weeks ago needNGS • 0
0
votes
6
replies
2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 6 months ago by ★ 4.1k • written 17 months ago by • 0
0
votes
6
replies
856
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
11 months ago simone.tiberi • 0
1
vote
5
replies
519
views
Can't post a question containing code?
Bioconductor
updated 9 days ago by • 0 • written 3 months ago by ▴ 10
3
votes
5
replies
1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 10 months ago by 6.7k • written 10 months ago by ▴ 20
2
votes
5
replies
1.4k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 14 months ago by • 0
0
votes
5
replies
1.0k
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 10 months ago by 3.9k • written 10 months ago by • 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.3 years ago by ▴ 10
2
votes
5
replies
215
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
4 days ago • updated 2 days ago Patadù ▴ 10
0
votes
5
replies
9.3k
views
tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 8 weeks ago by • 0 • written 7.6 years ago by • 0
0
votes
4
replies
758
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
12 months ago sreeshmaraj72 • 0
1
vote
4
replies
793
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
9 months ago patrick.turko • 0
0
votes
4
replies
811
views
Bioconductor installation
Bioconductor
written 4 months ago by • 0
2
votes
4
replies
667
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 6 months ago by 3.9k • written 6 months ago by • 0
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 3 months ago by 50k • written 4.8 years ago by • 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 6 months ago Konstantinos Yeles ▴ 80
4
votes
3
replies
357
views
Bioconductor code browser time out
Bioconductor
updated 4 months ago by ★ 6.5k • written 4 months ago by ▴ 30
0
votes
3
replies
582
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
6 months ago blessybo • 0
0
votes
3
replies
1.7k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
2
votes
2
replies
333
views
How to contact Bioconductor's test host?
Bioconductor
updated 4 months ago by 16k • written 4 months ago by ▴ 30
0
votes
2
replies
930
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.3 years ago by • 0
0
votes
2
replies
907
views
News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
13 months ago • updated 11 months ago shepherl 3.9k
1
vote
2
replies
689
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 9 months ago by 65k • written 9 months ago by ▴ 10
0
votes
2
replies
192
views
bioconductor emailing list
Bioconductor
updated 7 weeks ago by 3.9k • written 7 weeks ago by • 0
0
votes
2
replies
683
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
0
votes
2
replies
984
views
MACS2 not installing
Bioconductor
8 months ago alia.sinqua • 0
0
votes
2
replies
1.4k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 15 months ago by • 0
0
votes
2
replies
2.5k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago Avner • 0
1
vote
2
replies
279
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
10 weeks ago thomas • 0
0
votes
2
replies
1.2k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by • 0 • written 8 months ago by • 0
0
votes
2
replies
819
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
5
votes
2
replies
797
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
0
votes
1
reply
330
views
News: BioC2024 abstract submission is open!
BioC2024 Conference Bioconductor
updated 8 weeks ago by • 0 • written 3 months ago by ▴ 70
2
votes
1
reply
879
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 7 months ago by 50k • written 7 months ago by • 0
0
votes
1
reply
217
views
Limitation on single file size and package size when developing Bioc package
packagedevelopment datalimit Bioconductor
updated 3 months ago by 16k • written 3 months ago by • 0
5
votes
1
reply
464
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.9k
0
votes
1
reply
268
views
Bioconductor: Won't Update to 3.18 with Default Command
Bioconductor
updated 3 months ago by ▴ 730 • written 3 months ago by ▴ 30
0
votes
1
reply
643
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 10 months ago by ★ 6.5k • written 10 months ago by • 0
0
votes
1
reply
1.2k
views
News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 15 months ago by ▴ 70
3
votes
1
reply
341
views
News: Bioconductor.org has a new look!
Bioconductor Website
written 4 months ago by 3.9k
2
votes
1
reply
295
views
News: "Edit" button not working
Bioconductor Website SupportSite
updated 3 months ago by • 0 • written 4 months ago by 3.9k
0
votes
1
reply
495
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
10 months ago Arianna • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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