Bioconductor Chip-Seq

Showing : Chip-Seq • reset

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1.6k

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DiffBind SpikeIn Normalization ChIP-seq csaw

16 months ago spg • 0

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1.3k

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HOMER chip-seq

updated 18 months ago by ATpoint ★ 4.1k • written 18 months ago by 兆豪 • 0

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947

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ChIPQC ChIP-seq DiffBind Rory_Stark

21 months ago etiennedanis • 0

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1.7k

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ChIP-seq

updated 13 months ago by archibaldmarston • 0 • written 23 months ago by Bogdan ▴ 670

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741

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ChIP-seq

updated 2.2 years ago by Guillaume Devailly ▴ 60 • written 2.2 years ago by Bogdan ▴ 670

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935

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DiffBind chip-seq differentially-binding-site

updated 3.6 years ago by Rory Stark ★ 5.2k • written 3.6 years ago by Mar Mar ▴ 20

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1.1k

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DiffBind MA plot normalization ChIP-seq

updated 3.8 years ago by Rory Stark ★ 5.2k • written 3.8 years ago by hasse.bossenbroek • 0

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1.3k

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chip-seq diffBind sequence_analysis

updated 3.8 years ago by Rory Stark ★ 5.2k • written 3.8 years ago by Mar Mar ▴ 20

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510

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DiffBind ChIP-seq

updated 3.9 years ago by Rory Stark ★ 5.2k • written 4.0 years ago by bioinfouser2 ▴ 10

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1.3k

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diffbind chip-seq chip spike spike-ins

updated 3.9 years ago by Rory Stark ★ 5.2k • written 4.0 years ago by Theo ▴ 10

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702

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chipqc chip-seq

4.1 years ago tuteja.reetu • 0

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748

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RNA-seq ChIP-seq Job

4.2 years ago Johannes Rainer ★ 2.0k

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947

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csaw chip-seq

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by ATpoint ★ 4.1k

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TranscriptR RNA-seq ChIP-seq

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by jason.williams • 0

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833

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diffbind chip-seq

updated 4.5 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by melnuesch ▴ 10

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904

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diffbind chip-seq dba.peakset

updated 4.5 years ago by Rory Stark ★ 5.2k • written 4.6 years ago by Theo ▴ 10

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1.5k

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single cell sequencing RNA-Seq ChIP-Seq ATAC-Seq Job

4.8 years ago • updated 4.7 years ago Julie Zhu ★ 4.3k

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2.7k

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chip-seq peak calling diffbind

updated 4.9 years ago by Rory Stark ★ 5.2k • written 4.9 years ago by aviv.de-morgan • 0

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1.3k

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ChIP-seq ChIPQC QC

updated 4.7 years ago by zhenfeng.liu1 ▴ 20 • written 5.2 years ago by star ▴ 10

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884

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R chip-seq histone chip-seq ggbio

5.4 years ago Ramiro Magno ▴ 100

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1.2k

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re-annotation affymetrix microarrays chip-seq affymetrix mouse gene arrays

5.5 years ago 2323982403 ▴ 60

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863

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normalization chip-seq

5.5 years ago Bogdan ▴ 670

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1.4k

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ChIP-seq csaw

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Nicolas Servant ▴ 260

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914

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diffbind chip-seq R

5.6 years ago pierre.marin • 0

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1.0k

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chip-seq normalization

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Nicolas Servant ▴ 260

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2.2k

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chip-seq granges R bed files

updated 5.8 years ago by spotifywebplayer • 0 • written 5.8 years ago by jinseok • 0

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1.6k

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ChIP-seq chippeakanno chipseeker

5.8 years ago 94133 • 0

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1.4k

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csaw software error R chip-seq bioconductor

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by 94133 • 0

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2.2k

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diffbind macs2 chip-seq

6.4 years ago chunhong.liu07 ▴ 10

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1.2k

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ChIPQC chip-seq

6.4 years ago nbkingsley • 0

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1.2k

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csaw histone chip-seq chip-seq

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by gil.hornung • 0

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1.6k

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chip-seq

updated 6.6 years ago by Hervé Pagès 16k • written 6.6 years ago by gnani.science • 0

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2.4k

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DiffBind dba.count Chip-Seq Differential analysis

updated 3.1 years ago by Goku • 0 • written 6.6 years ago by urjaswita ▴ 40

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2.3k

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csaw edger chip-seq

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by jms1223 ▴ 10

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1.5k

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soGGi chip-seq region

updated 6.7 years ago by Thomas Carroll ▴ 420 • written 6.8 years ago by 835102330 • 0

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1.4k

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diffbind chip-seq

updated 6.8 years ago by Gord Brown ▴ 650 • written 6.8 years ago by AA ▴ 10

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1.5k

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chipseeker chip-seq annotation Guangchuang

updated 6.9 years ago by Guangchuang Yu ★ 1.2k • written 6.9 years ago by anupriyaverma1408 • 0

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852

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chip-seq meta-analysis

6.9 years ago rezapanahi222 • 0

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906

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chip-seq

updated 7.2 years ago by Wolfgang Huber ★ 13k • written 7.2 years ago by Bogdan ▴ 670

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1.6k

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diffbind edger deseq2 chip-seq

updated 7.2 years ago by Rory Stark ★ 5.2k • written 7.3 years ago by siklenkak • 0

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1.9k

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diffbind chip-seq normalization deseq2 tmm

updated 7.3 years ago by Rory Stark ★ 5.2k • written 7.3 years ago by siklenkak • 0

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1.9k

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csaw chip-seq histone

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by siklenkak • 0

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2.3k

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csaw chip-seq normalization edger cqn

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by s1437643 ▴ 20

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1.0k

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diffbind chip-seq

updated 7.7 years ago by Rory Stark ★ 5.2k • written 7.7 years ago by D.Hemerich • 0

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1.3k

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chip-seq differential binding analysis

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by damian.kao • 0

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4.0k

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diffbind chip-seq

updated 7.8 years ago by Rory Stark ★ 5.2k • written 7.8 years ago by sarah.blackstone7734 • 0

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2.0k

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diffbind ChIP-seq

updated 3 months ago by Rory Stark ★ 5.2k • written 7.8 years ago by xie186 • 0

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1.8k

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deseq2 chip-seq Differential binding

7.9 years ago p2016k • 0

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3.2k

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chip-seq TSS TMM csaw

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by saadmurtazakhan ▴ 10

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986

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algorithms ChIP-seq cancer Job

7.9 years ago valentina.boeva • 0

50 results • Page 1 of 1

Recent ...

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

Awards • All

Scholar to ATpoint ★ 4.1k