Showing : ClusterProfiler • reset
1
vote
1
reply
3.1k
views
Is there a way to set the ClusterProfiler color gradient?
clusterprofiler
7.4 years ago knaxerova ▴ 10
0
votes
3
replies
1.7k
views
Prostar (query on GO analysis)
Prostar Dapar clusterprofiler
updated 7.4 years ago by ▴ 10 • written 7.4 years ago by • 0
0
votes
9
replies
6.0k
views
What does "level" argument mean in groupGO function (cluster profiler)?
clusterprofiler go groupGO
updated 7.5 years ago by 68k • written 7.5 years ago by ▴ 370
0
votes
1
reply
1.1k
views
How to arrive at an optimal value for attribute level in groupGO or enrichGO in clusterprofiler
clusterprofiler groupGO gene ontology level
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 10
1
vote
1
reply
2.8k
views
Font size plotGOgraph
clusterProfiler plotGOgraph
updated 7.5 years ago by • 0 • written 7.5 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Which GO is used for clusterProfiler?
clusterprofiler
7.5 years ago heir_of_isildur88 • 0
1
vote
1
reply
2.2k
views
enrichGO (clusterProfiler) produces different results
chipseq go enrichment clusterprofiler
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by ▴ 840
1
vote
2
replies
2.4k
views
clusterProfiler for Zebrafish (Danio rerio)
clusterprofiler
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by • 0
2
votes
2
replies
5.3k
views
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler GSEA MSIGDB
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by • 0
3
votes
5
replies
2.7k
views
ReactomePA - Pathway analysis for DE porcine genes
reactomepa clusterprofiler
7.6 years ago thomasjenner333 • 0
0
votes
2
replies
2.4k
views
merging gseaResult objects
clusterprofiler gsea
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by • 0
1
vote
0
replies
1.4k
views
ClusterProfiler Annotation Problem
ClusterProfiler
7.7 years ago papanton ▴ 10
1
vote
1
reply
2.5k
views
Inconsistency of results GSEA clusterprofiler
gsea clusterprofiler
7.8 years ago Stane ▴ 40
0
votes
5
replies
2.8k
views
enrichGO returning NA
clusterprofiler org.hs.eg.db
updated 7.8 years ago by ★ 1.2k • written 7.8 years ago by • 0
0
votes
2
replies
6.1k
views
failing to install the package clusterProfiler in R (version 3.4.1)
clusterprofiler
updated 7.8 years ago by ★ 1.2k • written 7.8 years ago by • 0
0
votes
1
reply
1.4k
views
Error with ecolik12 enrichGO
clusterprofiler
updated 7.9 years ago by ★ 4.1k • written 7.9 years ago by • 0
0
votes
1
reply
3.4k
views
gseaplot() function of clusterProfiler went wrong
gsea clusterprofiler
7.9 years ago giuseppe0525 • 0
2
votes
6
replies
15k
views
GSEA using clusterProfiler
GSEA clusterProfiler
7.9 years ago giuseppe0525 • 0
1
vote
4
replies
3.1k
views
clusterProfiler compareCluster enrichDAVID
clusterProfiler
updated 7.9 years ago by ★ 4.1k • written 7.9 years ago by ▴ 20
2
votes
2
replies
4.6k
views
enrichGO from DOSE, clusterprofiler is returning empty result.
DOSE clusterprofiler annotation gene ontology gene set enrichment
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 20
3
votes
2
replies
7.1k
views
Pathway analysis using ReactomePA::enrichPathway(): doubts about minGSSize and maxGSSize arguments
reactomepa pathway analysis enrichment analysis clusterprofiler
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 10
0
votes
6
replies
9.1k
views
question on GO analysis using clusterProfiler
clusterprofiler geneontology
updated 7.9 years ago by ▴ 160 • written 7.9 years ago by • 0
0
votes
1
reply
1.6k
views
clusterprofiler enrichment analysis geneList argument: duplicate 'row.names' (entrezID) are not allowed?
clusterprofiler
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by • 0
3
votes
1
reply
7.8k
views
clusterProfiler - Non model organism
clusterprofiler
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 10
0
votes
2
replies
1.9k
views
GO analysis under-represented genes and over-represented (enrichment) down-regulated genes
go rnaseq clusterprofiler topgo
8.0 years ago Jack ▴ 20
0
votes
1
reply
3.4k
views
How many genes are appropriate for GO enrichment analysis
go annotate rna-seq clusterprofiler
updated 8.0 years ago by ▴ 120 • written 8.0 years ago by ▴ 20
4
votes
2
replies
5.9k
views
GSEA using clusterprofileR
clusterprofiler gsea
written 8.0 years ago by ▴ 30
1
vote
1
reply
1.5k
views
clusterProfiler enrichGO under-represented term
clusterProfiler enrichGO
8.0 years ago Francois Marchildon ▴ 20
4
votes
3
replies
4.9k
views
clusterProfiler: Which GO version is used behind ?
clusterProfiler
updated 8.1 years ago by ★ 4.1k • written 8.1 years ago by ▴ 60
1
vote
4
replies
3.9k
views
clusterProfiler - interpretation of enrichMap
clusterprofiler
updated 8.2 years ago by • 0 • written 8.9 years ago by ▴ 90
0
votes
3
replies
3.2k
views
eroor mssage using gseKEGG
clusterprofiler
8.2 years ago bruno.saubamea • 0
1
vote
4
replies
4.2k
views
gseDO function input
DOSE clusterprofiler
updated 8.2 years ago by ★ 1.2k • written 8.2 years ago by • 0
2
votes
3
replies
2.2k
views
custom annotation for GO enrichment
annotationforge GSEA clusterprofiler GO annotation
8.2 years ago cabezasdelafuented ▴ 10
2
votes
4
replies
4.0k
views
#clusterProfiler# KEGG enrichment with non-reference species
clusterprofiler kaas enrichKEGG
updated 8.2 years ago by • 0 • written 9.1 years ago by • 0
3
votes
4
replies
4.9k
views
Sort clusterProfiler result
clusterProfiler sort
updated 8.3 years ago by • 0 • written 10.1 years ago by ▴ 10
0
votes
1
reply
3.8k
views
ClusterProfiler dotplot formatting
clusterprofiler
updated 8.3 years ago by ★ 1.2k • written 8.3 years ago by • 0
0
votes
5
replies
5.4k
views
odd results "No enrichment found in any of gene cluster"
clusterprofiler
updated 8.3 years ago by ★ 1.2k • written 8.3 years ago by ▴ 50
0
votes
1
reply
1.7k
views
GSEA threshold question
GSEa r clusterprofiler reactomepa
8.3 years ago bhgyu ▴ 30
1
vote
13
replies
17k
views
GeneList issue ClusterProfiler
genelist clusterprofiler
8.4 years ago bhgyu ▴ 30
3
votes
4
replies
10k
views
What's the difference between p.adjust and qvalue?
clusterprofiler
updated 8.4 years ago by ★ 4.1k • written 8.4 years ago by ▴ 10
3
votes
3
replies
4.1k
views
problem reinstalling Bioconductor package 'clusterProfiler' after updating R to 3.4.0
clusterprofiler package installation r update
updated 8.4 years ago by ▴ 10 • written 8.4 years ago by ▴ 10
0
votes
9
replies
3.8k
views
clusterProfiler setup specified order
clusterProfiler
8.5 years ago joseph ▴ 50
2
votes
2
replies
5.7k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
8.5 years ago • updated 4.9 years ago tcalvo ▴ 100
1
vote
4
replies
7.8k
views
ClusterProfiler - How to : input file, groupGo, enrichGo
clusterprofiler input files error help
updated 8.6 years ago by ★ 1.2k • written 8.6 years ago by • 0
1
vote
4
replies
4.1k
views
clusterprofiler KEGG enrichment for arabidopsis
clusterprofiler
8.6 years ago chentong_biology ▴ 10
0
votes
1
reply
2.7k
views
clusterProlifer: plotGOgraph() error with gseGO() result
clusterprofiler gseGO plotGOgraph() topGO
updated 8.6 years ago by ★ 1.2k • written 8.6 years ago by • 0
1
vote
1
reply
3.2k
views
clusterProfiler - enrichGO and enrichPathway not returning any results
clusterProfiler
8.7 years ago cguzman.roma • 0
0
votes
6
replies
9.7k
views
No gene can be mapped error with clusterprofiler
clusterprofiler r
updated 21 months ago by ★ 4.1k • written 8.7 years ago by • 0
2
votes
5
replies
4.6k
views
GO enrichment comparison with other programs
clusterprofiler enrichment analysis
updated 8.8 years ago by ★ 1.2k • written 8.8 years ago by ▴ 40
0
votes
8
replies
3.6k
views
Got an confusing about BgRatio in enrichKEGG result of clusterprofiler
clusterprofiler
updated 8.8 years ago by ★ 1.2k • written 8.8 years ago by ▴ 30
288 results • Page 5 of 6
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Michael Love 43k
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Locations • All
United States, 1 minute ago
Pittsburgh, United States, 2 hours ago
United States, 2 hours ago
United States, 4 hours ago
United States, 4 hours ago
Traffic: 997 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6