Showing : Ensembl • reset
6
votes
1
reply
9.1k
views
Finding orthologous human/mouse ENSEMBL IDs
human mouse ensembl annotationdbi homologue
8.4 years ago Keith Hughitt ▴ 180
3
votes
14
replies
4.8k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart error ensembl bioconductor ensembl mart
8.4 years ago daniel.carbajo • 0
1
vote
0
replies
1.5k
views
News: Ensembl 89 has been released
ensembl biomart ensemblbiomart ensembl89 News
8.4 years ago Thomas Maurel ▴ 800
0
votes
3
replies
1.5k
views
DESeq2 output with multiple Ensembl Gene Names per row, how to resolve?
rnaseq deseq2 ensembl
updated 8.5 years ago by 43k • written 8.5 years ago by • 0
2
votes
12
replies
3.7k
views
biomaRt does not return entrezgene id
bioconductor biomart entrez gene identifiers ensembl ensembl mart
updated 8.6 years ago by ▴ 800 • written 8.6 years ago by • 0
5
votes
5
replies
2.7k
views
News: Ensembl 88 is out!
ensembl ensembl mart biomart e!88 News
8.6 years ago Thomas Maurel ▴ 800
0
votes
0
replies
1.4k
views
News: Ensembl 87 is out!
ensembl ensemble mart ensembl mart biomart News
8.9 years ago amonida ▴ 20
1
vote
1
reply
1.5k
views
News: Ensembl release 86 is out!
ensembl biomart ensembl release ensembl mart News
9.1 years ago Thomas Maurel ▴ 800
0
votes
2
replies
2.4k
views
Gviz - adding ensembl gene annotation track
gviz ensembl
9.2 years ago just • 0
0
votes
5
replies
2.1k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 10
1
vote
0
replies
1.5k
views
News: Ensembl release 85 is out!
ensembl biomart release85 ensembl release mart News
9.3 years ago Thomas Maurel ▴ 800
0
votes
5
replies
5.8k
views
Ensembl biomaRt connection errors
software error biomart ensembl
updated 9.4 years ago by ▴ 70 • written 9.4 years ago by • 0
1
vote
5
replies
3.7k
views
Ensembl bacteria not accessible from biomaRt
biomart ensembl
updated 9.5 years ago by 25k • written 9.5 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Ensembl version from non-vertebrate biomaRt
biomart ensembl
updated 9.5 years ago by ▴ 70 • written 9.5 years ago by ▴ 20
4
votes
9
replies
3.8k
views
News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 9.6 years ago by ▴ 20 • written 9.7 years ago by ▴ 800
2
votes
2
replies
1.5k
views
goseq package: Is the package in sync with the most current Ensembl release?
goseq ensembl
updated 9.6 years ago by ★ 2.1k • written 9.6 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Low yield mapping ensembl transcript ids to entrez gene ids in biomart
biomart ensembl ensemble mart entrez gene identifiers
9.8 years ago serpalma.v ▴ 60
4
votes
5
replies
2.2k
views
ChIPpeakAnno getAnnotation request fail
chippeakanno biomart ensembl
9.8 years ago igor ▴ 50
0
votes
0
replies
1.9k
views
News: Ensembl 83 is out!
ensemble mart ensembl biomart ensembl release News
9.9 years ago amonida ▴ 20
1
vote
2
replies
4.2k
views
Converting annotation from UCSC to Ensembl
ensembl ucsc annotation
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 110
0
votes
0
replies
1.8k
views
News: Ensembl GRCh37 release 82 - second data update
ensembl biomart News grch37 GRCh37
10.1 years ago amonida ▴ 20
0
votes
0
replies
1.4k
views
News: Ensembl release 82 is out!
biomart ensembl release82 variation mouse News
10.1 years ago Thomas Maurel ▴ 800
0
votes
3
replies
3.0k
views
biomaRt fails for M.musculus annotation, Ensembl version 80
biomart ensembl
updated 10.2 years ago by ▴ 20 • written 10.2 years ago by ▴ 80
0
votes
1
reply
2.1k
views
Problem with visualising empty tracks from ensembl
gviz ensembl
updated 10.2 years ago by ★ 1.6k • written 10.2 years ago by • 0
1
vote
2
replies
1.4k
views
Using Ensmbl rel 80, when rel 79 is supported by BioConductor
ensembl
updated 10.3 years ago by ★ 2.1k • written 10.3 years ago by • 0
5
votes
2
replies
3.4k
views
News: Ensembl release 81 is out!
human mouse GRCh38 biomart Ensembl News
updated 10.3 years ago by ▴ 390 • written 10.3 years ago by ▴ 800
2
votes
4
replies
2.2k
views
customProDB: issues getting dbSNP data for non-model organism
ensembl macaque dbsnp customprodb
updated 10.4 years ago by ▴ 50 • written 10.4 years ago by • 0
0
votes
2
replies
1.9k
views
Ensembl database query with biomart behaves strangely when using chromosomes as filter values
biomart ensembl
updated 10.4 years ago by ▴ 800 • written 10.4 years ago by ▴ 20
2
votes
1
reply
1.5k
views
Why does biomaRt query show inconsistent behavior with ensembl versions from March and May
biomart ensembl
10.4 years ago jmeisig ▴ 20
2
votes
1
reply
1.4k
views
GoSeq: use ENSEMBLTRANS as input
goseq ensembl
updated 10.5 years ago by ▴ 320 • written 10.5 years ago by ▴ 10
9
votes
1
reply
2.7k
views
News: Ensembl release 80 is out!
biomart Ensembl zebrafish Rat 1000 genomes phase 3 News
updated 10.5 years ago by ▴ 390 • written 10.5 years ago by ▴ 800
0
votes
0
replies
2.0k
views
News: Ensembl GRCh37 release 79 data update
biomart ensembl release news GRCh37 News
10.6 years ago Thomas Maurel ▴ 800
0
votes
5
replies
2.2k
views
News: Ensembl 79 release is out!
Ensembl biomart release news News
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 20
0
votes
6
replies
3.0k
views
converting UniProt to SGD ids using UniProt.wd
uniprot.ws uniprot ensembl
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by ▴ 160
0
votes
2
replies
2.7k
views
use BiomartGeneRegionTrack with the dataset grch37.ensembl.org
gviz ensembl biomart
10.9 years ago Tiphaine Martin ▴ 40
0
votes
2
replies
2.0k
views
Missing ensembl_ids in biomaRt uniprot query
biomaRt uniprot ensembl
updated 10.9 years ago by • 0 • written 10.9 years ago by ▴ 510
0
votes
0
replies
1.5k
views
News: Ensembl 78 release is out!
Ensembl Biomart News
10.9 years ago amonida ▴ 20
6
votes
5
replies
8.8k
views
biomaRt: no access to Ensembl_75 (GRCh37.p13)
biomarRt ensembl
updated 11.0 years ago by • 0 • written 11.0 years ago by • 0
2
votes
3
replies
12k
views
BiomaRt: protein coding transcript identification
ensembl protein coding biomart
updated 11.0 years ago by ▴ 800 • written 11.0 years ago by ▴ 120
13
votes
8
replies
18k
views
how to use biomaRt with ensembl build 37
biomaRt ensembl GRCh37
updated 11.1 years ago by ▴ 800 • written 11.1 years ago by ▴ 90
0
votes
0
replies
1.7k
views
News: Useful information about Ensembl release 77 mart databases
ensembl biomart Vervet-AGM News
11.1 years ago Thomas Maurel ▴ 800
141 results • Page 3 of 3
Recent ...
Replies
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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