Showing : Genetics • reset
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Limma - using both array and spot weights in lmFit
Genetics Genetics
written 18.5 years ago by ▴ 170
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582
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
17 months ago pierre.devillemereuil • 0
0
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0
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572
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accesing gene name RNAseq
genetics GeneticsPed Genetics
23 months ago Gülsüm • 0
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0
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1.2k
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Job: Bioinformatics Research Associate, Genomics and Genetics
genomes Genetics
23 months ago JP Cartailler ▴ 40
0
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3
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1.6k
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Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
3
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5
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1.6k
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calculate distance to a certain sequence in one gene
SummarizedExperiment Genetics
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
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0
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1.4k
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
3.1 years ago gaow • 0
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0
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1.3k
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
4.8 years ago António Miguel de Jesus Domingues ▴ 510
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1.5k
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Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
5.0 years ago Vincent J. Carey, Jr. 6.7k
2
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0
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1.6k
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Job: developer/project management position at Harvard Medical School
softwaredevelopment Job job cloudcomputing genetics
5.1 years ago • updated 4.7 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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2.3k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
7.3 years ago • updated 4.9 years ago Luo Weijun ★ 1.6k
4
votes
6
replies
1.8k
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Extremely big genes in annotation TxDb packages
annotation txdb AnnotationData Genetics
updated 5.3 years ago by 68k • written 5.3 years ago by ▴ 10
0
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1
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1.6k
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DiffBind - Counting reads - counts not found
diffbind differential analysis genetics #chip-seq
updated 6.6 years ago by ★ 5.2k • written 6.7 years ago by • 0
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0
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1.6k
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Job: Computational Biology / Genomics Internship at Denali Therapeutics
internship genomics genetics Job
6.7 years ago Steve Lianoglou ★ 13k
0
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0
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1.1k
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package for mismatch distribution?
genetics statistics
6.8 years ago myriam.croze07 • 0
1
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0
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1.5k
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Job: 2 Postdoc and 2 PhD positions in Regulatory genomics / Rare disease Gagneur lab, TU Munich
genomics genetics machine learning Job
7.0 years ago gagneur ▴ 10
0
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1
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1.4k
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Normalization and Quality Control for Multiple scRNAseq Data Sets
normalization rnaseq genetics batch effect dropout
updated 7.0 years ago by ★ 13k • written 7.0 years ago by • 0
0
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1
reply
2.4k
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Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
1
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1
reply
1.3k
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co-evolution analysis for RNA
genetics
7.4 years ago tg369 ▴ 40
2
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0
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1.8k
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Job: Statistical Geneticist at Denali Therapeutics, South San Francisco, CA, USA
job genetics drug development neurodegeneration Job
7.4 years ago sandmann.t ▴ 70
0
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0
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1.5k
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
genetics job biostatistics genomics bioinformatics Job
7.5 years ago xzhousph • 0
1
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3
replies
2.7k
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Gene ID Duplicates
deseq2 genetics Tutorial
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
0
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4
replies
14k
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Normalization by DEseq
Genetics Normalization DESeq Genetics Normalization DESeq
updated 7.7 years ago by • 0 • written 15.0 years ago by ▴ 20
0
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0
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1.7k
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fisher exact test pairwise associations between gene mutations
genetics
8.2 years ago wasmetqall • 0
0
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0
replies
1.9k
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Job: Research Co-ordinator (Full Time)
genetics obesity molecular biology biomedical science Job
8.2 years ago njc65 • 0
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0
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1.6k
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
biostatistics genetics Job
8.5 years ago hong.lee • 0
0
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0
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2.0k
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Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
8.7 years ago • updated 8.5 years ago Luo Weijun ★ 1.6k
0
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0
replies
1.9k
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Job: Postdoctoral Research Associate, Wellcome Trust-MRC Institute of Metabolic Science (Fixed Term)
genetics job genomics postdoc obesity Job
8.7 years ago njc65 • 0
0
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1
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1.5k
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Extension to GoogleGenomics: getVariantCalls
GoogleGenomics genetics variants
8.7 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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2.1k
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Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
9.2 years ago dtlabmskcc • 0
0
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0
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1.2k
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What statistical test is appropriate? 2 categorical independent variables, 3 categorical dependent variables, biological replicates
genetics
9.2 years ago efoss ▴ 10
0
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0
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1.4k
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homologue gene conversion worm to human
biomaRt homologue annotation genetics
9.2 years ago Nemo ▴ 80
0
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0
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1.3k
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Genetic Association analysis using four siblings among which three were affected and one was normal
genetics plink linkage disequilibrium
9.3 years ago li lilingdu ▴ 450
2
votes
0
replies
1.7k
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Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
9.4 years ago enridomenici ▴ 10
1
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1
reply
1.8k
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Question about EAGenes (TCGAbiolinks)
annotation cancer biomart genetics R
updated 9.6 years ago by ▴ 260 • written 9.6 years ago by • 0
1
vote
12
replies
4.1k
views
Problem running summarizeOverlaps()
Genetics Genetics
updated 9.7 years ago by ▴ 10 • written 11.4 years ago by ▴ 140
0
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0
replies
2.0k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
10.3 years ago careers • 0
0
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0
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1.8k
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Job: Come apply for our Epidemiologist, AncestryHealth role
genomics genetics design statistics scientist Job
10.3 years ago careers • 0
2
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0
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2.3k
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Job: 23andMe Job Opportunities
bioinformatician job bioinformatics scientist genetics Job
10.5 years ago rgentleman ★ 5.5k
1
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0
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2.4k
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Job: Bioinformatics / Biostatistics in genetic interaction analysis
high-throughput screening interactions genetics jobs image analysis Job
10.5 years ago Bernd Fischer ▴ 550
3
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5
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3.1k
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How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease genetics micro array data microarray
updated 10.6 years ago by 53k • written 10.6 years ago by ▴ 20
0
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0
replies
2.5k
views
Job: Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics genetics proteomics rnaseq microarray Job
10.6 years ago Feng Hong • 0
0
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1
reply
4.2k
views
DESeq2 - factor base level changes the DE genes.
RNASeq Genetics DESeq2 RNASeq Genetics DESeq2
updated 11.0 years ago by 43k • written 11.3 years ago by ★ 13k
1
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1
reply
2.3k
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Question about decideTestsDGE()
Genetics edgeR
updated 11.1 years ago by 53k • written 11.2 years ago by ▴ 270
2
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0
replies
2.6k
views
Job: Job Opening: Computational Biologist @ Genentech Bioinformatics
Job Sequencing Genetics Cancer
updated 11.1 years ago by ★ 8.2k • written 11.2 years ago by ★ 11k
0
votes
3
replies
2.5k
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Error running makeTranscriptDbFromGFF in GenomicFeatures
Genetics TranscriptDb GenomicFeatures
updated 11.1 years ago by ★ 11k • written 11.1 years ago by ▴ 270
0
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0
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2.6k
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Plot exon number per gene and transcript lengths
Genetics TranscriptDb GenomicFeatures
11.2 years ago Jon Bråte ▴ 270
0
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8
replies
3.5k
views
Expected number of DE genes?
Genetics edgeR DESeq2 Genetics edgeR DESeq2
updated 11.3 years ago by ▴ 750 • written 11.3 years ago by ▴ 140
0
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2
replies
1.7k
views
Can my problem be addressed with Bioconductor?
Genetics GOstats SNPchip topGO Genetics GOstats SNPchip topGO
updated 11.4 years ago by 68k • written 11.4 years ago by ★ 13k
0
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2
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2.6k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 11.4 years ago by ▴ 570 • written 11.4 years ago by 16k
337 results • Page 1 of 7
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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