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0
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2
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280
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BiocManager::install() doesn't work
Install Biocond
updated 3 months ago by 700 • written 3 months ago by • 0
0
votes
2
replies
928
views
Install old version of DESeq2
apeglm Install DESeq2 version
updated 3 months ago by 68k • written 3 months ago by • 0
0
votes
1
reply
476
views
Can't install BioC packages (and manager) behind firewall
Install
updated 5 months ago by 700 • written 5 months ago by • 0
0
votes
2
replies
1.1k
views
Automatically install dependencies
Install dependencies biocmanager
updated 8 months ago by 4.2k • written 8 months ago by • 0
0
votes
2
replies
1.7k
views
Cannot install GO.db and org.Hs.eg.db
Install
updated 10 months ago by 68k • written 10 months ago by • 0
1
vote
3
replies
1.1k
views
chemmineOB install help
ChemmineOB Install
17 months ago • updated 16 months ago jrbald04 • 0
1
vote
9
replies
1.8k
views
Cannot install oligo on Fedora
oligo source Install
17 months ago • updated 16 months ago Guido Hooiveld ★ 4.1k
5
votes
6
replies
4.7k
views
Not able to install any Bioconductor 3.18 package [unable to access index]
Install
updated 17 months ago by ▴ 150 • written 17 months ago by ▴ 140
2
votes
2
replies
996
views
unable to access bioconductor packages - qvalue installation failed...
Install
updated 17 months ago by 4.2k • written 17 months ago by ▴ 10
2
votes
4
replies
1.5k
views
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Install GenomeInfoDbData GenomeInfoDb
updated 17 months ago by 68k • written 17 months ago by ▴ 20
1
vote
0
replies
8.1k
views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
18 months ago BioinfGuru ▴ 70
0
votes
2
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2.0k
views
error in install immunedeconv
Install
updated 19 months ago by • 0 • written 2.6 years ago by • 0
0
votes
4
replies
1.1k
views
DNABarcodes-Installation Issue
DNABarcodes Install
21 months ago nk130 • 0
0
votes
6
replies
3.5k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 23 months ago by ★ 5.0k • written 2.9 years ago by • 0
0
votes
0
replies
1.5k
views
Version map cannot be validated - not mapping to new bioconductor website
Install
23 months ago Alexander • 0
2
votes
5
replies
2.5k
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 24 months ago by 43k • written 24 months ago by • 0
0
votes
7
replies
3.7k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
votes
1
reply
1.3k
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 2.3 years ago by ★ 6.6k • written 2.3 years ago by • 0
3
votes
5
replies
2.3k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 2.3 years ago by 6.7k • written 2.3 years ago by ▴ 20
0
votes
2
replies
1.1k
views
msa Installation failed - please help
Install msa
2.4 years ago Ido • 0
1
vote
4
replies
8.6k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 2.5 years ago by • 0 • written 3.7 years ago by • 0
0
votes
1
reply
5.6k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by • 0
1
vote
2
replies
1.6k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
2.7 years ago abhisek001 • 0
1
vote
1
reply
4.1k
views
packages not installing from sources the package which needs compilation
Install
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
2
votes
4
replies
3.6k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 2.9 years ago by • 0
1
vote
7
replies
2.4k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 2.9 years ago by 4.2k • written 2.9 years ago by • 0
1
vote
3
replies
7.4k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 2.8 years ago by 4.2k • written 2.9 years ago by • 0
5
votes
18
replies
9.4k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 22 months ago by • 0 • written 3.8 years ago by • 0
0
votes
2
replies
2.3k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2 Install r
updated 3.0 years ago by ★ 5.0k • written 3.0 years ago by • 0
1
vote
20
replies
6.4k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 3.0 years ago by 68k • written 3.1 years ago by • 0
1
vote
3
replies
1.7k
views
I can't upgrade to version 3.15 in R
Install
updated 3.1 years ago by 53k • written 3.1 years ago by • 0
1
vote
1
reply
1.1k
views
Downloading DESeq package manually
DESeq2 Install
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
1
vote
1
reply
1.3k
views
Unable to install "scruff" with BiocManager::install()
scruff Install ShortRead
updated 3.2 years ago by 4.2k • written 3.2 years ago by • 0
0
votes
1
reply
1.7k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 3.4 years ago by 16k • written 3.4 years ago by • 0
2
votes
2
replies
1.6k
views
rtracklayer S.h
install
3.5 years ago gibran • 0
0
votes
1
reply
1.7k
views
trouble installing DESeq2
install packages R DESeq2
updated 3.5 years ago by 4.2k • written 3.5 years ago by • 0
0
votes
2
replies
3.5k
views
non-zero exit status when trying to install a package
Install
3.5 years ago BioC123 • 0
1
vote
3
replies
2.5k
views
Bioconductor installation error
Install
updated 3.5 years ago by • 0 • written 3.5 years ago by ▴ 10
0
votes
2
replies
2.2k
views
Installation problems
Install
updated 3.5 years ago by 4.2k • written 3.5 years ago by • 0
0
votes
2
replies
1.5k
views
Forking a package/install from source
install package fork bugfix
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
0
votes
2
replies
2.5k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 3.6 years ago by 4.2k • written 3.6 years ago by ▴ 70
2
votes
1
reply
5.0k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
3.6 years ago Theresa ▴ 20
1
vote
2
replies
1.4k
views
How to install R package from GitHub
Install github
updated 3.6 years ago by 4.2k • written 3.7 years ago by • 0
0
votes
3
replies
2.0k
views
Warning messages during intallation of XCMS
xcms Install
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
0
votes
3
replies
2.7k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 3.7 years ago by • 0 • written 3.8 years ago by • 0
3
votes
5
replies
13k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
3.7 years ago czan ▴ 10
4
votes
2
replies
6.4k
views
Install package without updating dependent package
Install AnnotationForge
3.9 years ago 亮 • 0
5
votes
4
replies
5.5k
views
XVector installation fails because zlib.h is not found
XVector docker Install
4.0 years ago • updated 3.9 years ago RobKo ▴ 10
0
votes
3
replies
2.3k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 4.0 years ago by ▴ 10 • written 4.0 years ago by • 0
0
votes
2
replies
2.1k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
4.0 years ago ladypurrsia ▴ 10
87 results • Page 1 of 2
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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