Showing : Install • reset
0
votes
2
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715
views
Automatically install dependencies
Install dependencies biocmanager
updated 9 weeks ago by 4.1k • written 10 weeks ago by • 0
0
votes
2
replies
1.2k
views
Cannot install GO.db and org.Hs.eg.db
Install
updated 4 months ago by 68k • written 4 months ago by • 0
1
vote
3
replies
910
views
chemmineOB install help
ChemmineOB Install
10 months ago jrbald04 • 0
1
vote
9
replies
1.5k
views
Cannot install oligo on Fedora
oligo source Install
11 months ago • updated 10 months ago Guido Hooiveld ★ 4.1k
5
votes
6
replies
3.9k
views
Not able to install any Bioconductor 3.18 package [unable to access index]
Install
updated 11 months ago by ▴ 150 • written 11 months ago by ▴ 140
2
votes
2
replies
748
views
unable to access bioconductor packages - qvalue installation failed...
Install
updated 11 months ago by 4.1k • written 11 months ago by ▴ 10
2
votes
4
replies
1.2k
views
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Install GenomeInfoDbData GenomeInfoDb
updated 11 months ago by 68k • written 11 months ago by ▴ 20
1
vote
0
replies
6.5k
views
Tutorial: Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor Install
12 months ago BioinfGuru ▴ 70
0
votes
2
replies
1.6k
views
error in install immunedeconv
Install
updated 12 months ago by • 0 • written 2.1 years ago by • 0
0
votes
4
replies
911
views
DNABarcodes-Installation Issue
DNABarcodes Install
15 months ago • updated 14 months ago nk130 • 0
0
votes
6
replies
3.3k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 17 months ago by ★ 4.8k • written 2.4 years ago by • 0
0
votes
0
replies
1.2k
views
Version map cannot be validated - not mapping to new bioconductor website
Install
17 months ago Alexander • 0
2
votes
5
replies
2.1k
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 17 months ago by 43k • written 17 months ago by • 0
0
votes
7
replies
3.2k
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
1.2k
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 21 months ago by ★ 6.6k • written 21 months ago by • 0
3
votes
5
replies
2.0k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 21 months ago by 6.7k • written 21 months ago by ▴ 20
0
votes
2
replies
924
views
msa Installation failed - please help
Install msa
23 months ago Ido • 0
1
vote
4
replies
7.8k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 24 months ago by • 0 • written 3.2 years ago by • 0
0
votes
1
reply
5.2k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 2.0 years ago by ★ 4.8k • written 2.0 years ago by • 0
1
vote
2
replies
1.4k
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
2.2 years ago abhisek001 • 0
1
vote
1
reply
3.6k
views
packages not installing from sources the package which needs compilation
Install
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
2
votes
4
replies
3.3k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 2.4 years ago by • 0
1
vote
7
replies
2.1k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 2.4 years ago by 4.1k • written 2.4 years ago by • 0
1
vote
3
replies
6.9k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 2.3 years ago by 4.1k • written 2.4 years ago by • 0
5
votes
18
replies
8.9k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 16 months ago by • 0 • written 3.2 years ago by • 0
0
votes
2
replies
2.2k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2 Install r
updated 2.5 years ago by ★ 4.8k • written 2.5 years ago by • 0
1
vote
20
replies
5.8k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
1
vote
3
replies
1.5k
views
I can't upgrade to version 3.15 in R
Install
updated 2.6 years ago by 52k • written 2.6 years ago by • 0
1
vote
1
reply
900
views
Downloading DESeq package manually
DESeq2 Install
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
1
vote
1
reply
1.2k
views
Unable to install "scruff" with BiocManager::install()
scruff Install ShortRead
updated 2.7 years ago by 4.1k • written 2.7 years ago by • 0
0
votes
1
reply
1.5k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 2.9 years ago by 16k • written 2.9 years ago by • 0
2
votes
2
replies
1.4k
views
rtracklayer S.h
install
2.9 years ago gibran • 0
0
votes
1
reply
1.6k
views
trouble installing DESeq2
install packages R DESeq2
updated 3.0 years ago by 4.1k • written 3.0 years ago by • 0
0
votes
2
replies
3.3k
views
non-zero exit status when trying to install a package
Install
3.0 years ago BioC123 • 0
1
vote
3
replies
2.2k
views
Bioconductor installation error
Install
updated 3.0 years ago by • 0 • written 3.0 years ago by ▴ 10
0
votes
2
replies
2.0k
views
Installation problems
Install
updated 3.0 years ago by 4.1k • written 3.0 years ago by • 0
0
votes
2
replies
1.3k
views
Forking a package/install from source
install package fork bugfix
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
2
replies
2.4k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 3.1 years ago by 4.1k • written 3.1 years ago by ▴ 70
2
votes
1
reply
4.8k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
3.1 years ago Theresa ▴ 20
1
vote
2
replies
1.2k
views
How to install R package from GitHub
Install github
updated 3.1 years ago by 4.1k • written 3.1 years ago by • 0
0
votes
3
replies
1.8k
views
Warning messages during intallation of XCMS
xcms Install
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
votes
3
replies
2.5k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 3.2 years ago by • 0 • written 3.3 years ago by • 0
3
votes
5
replies
12k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
3.2 years ago czan ▴ 10
4
votes
2
replies
6.0k
views
Install package without updating dependent package
Install AnnotationForge
3.4 years ago 亮 • 0
5
votes
4
replies
4.9k
views
XVector installation fails because zlib.h is not found
XVector docker Install
3.4 years ago RobKo ▴ 10
0
votes
3
replies
2.1k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 3.5 years ago by ▴ 10 • written 3.5 years ago by • 0
0
votes
2
replies
1.9k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
3.5 years ago ladypurrsia ▴ 10
2
votes
4
replies
4.3k
views
BiocManager::install() does not work anymore
Install PackageType
updated 3.5 years ago by 4.1k • written 3.5 years ago by • 0
0
votes
1
reply
1.6k
views
install GenomicFeatures fail
GenomicFeatures install
updated 3.7 years ago by 68k • written 3.7 years ago by ▴ 80
0
votes
5
replies
1.9k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install VariantAnnotation Bioconductor chromVAR
updated 3.7 years ago by 6.7k • written 3.7 years ago by • 0
50 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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