Showing : LIMMA • reset
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700
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Use limma to a non-genomic data
non-genomic quantitative limma
4.7 years ago Marcelo Laia ▴ 450
1
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3
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1.5k
views
The eBayes function gives two p-values for each row
hgu133plus2.db limma DifferentialExpression affy
updated 4.7 years ago by 53k • written 4.7 years ago by • 0
2
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2
replies
2.5k
views
Why does limma want log2 intensities but DESeq2 use raw counts?
limma DifferentialExpression DESeq2
4.7 years ago tjbencomo • 0
1
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1
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2.2k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
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0
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654
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Crossover with repeated measures
limma
4.7 years ago ijvechetti ▴ 10
2
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2
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1.6k
views
limma - removing samples?
ArrayExpress limma arrays
4.7 years ago RMP87 • 0
0
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3
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1.1k
views
Limma paired analysis design question
limma
updated 4.7 years ago by 53k • written 4.7 years ago by ▴ 20
1
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0
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1.3k
views
What are cov.coefficients and cov.coefficients.list returned by dream()?
variancePartition limma
4.8 years ago Junghoon ▴ 10
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1
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1.8k
views
Error while running variancePartition::dream()
variancePartition limma BiocParallel
4.8 years ago Junghoon ▴ 10
0
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1
reply
1.7k
views
Excessive memory requirement of variancePartition::dream()
BiocParallel limma variancePartition
4.8 years ago • updated 4.6 years ago Junghoon ▴ 10
0
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12
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3.3k
views
How to estimate prediction variance for limma mixed-effects models
limma
updated 4.8 years ago by 53k • written 4.8 years ago by ▴ 20
0
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1
reply
1.1k
views
model.matrix question
limma limma
updated 4.8 years ago by 53k • written 17.7 years ago by ▴ 90
0
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6
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2.1k
views
Sample quality weights for RNA-seq
DESeq2 limma weight
4.8 years ago Naomi Altman ★ 6.0k
4
votes
2
replies
1.9k
views
TargetsFile. Where it is?
Limma ArrayExpress GEO
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
0
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1
reply
771
views
Query regarding edgeR and limma
limma readDGE edgeR
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
0
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4
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2.2k
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
4.8 years ago Nirad ▴ 10
0
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2
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1.4k
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Limma experiment design and making contrasts
limma methylationArrayAnalysis
4.8 years ago Kesava • 0
1
vote
2
replies
1.7k
views
multifactorial design matrix
designmatrix RNA-seq limma
updated 4.8 years ago by 53k • written 4.8 years ago by ▴ 20
0
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1
reply
1.3k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData limma RNASeq RNASeqR
updated 4.8 years ago by 53k • written 4.8 years ago by • 0
1
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2
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2.3k
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How to quantile normalize arraystar lncRNA microarray data?
limma Microarray
4.8 years ago a.deb • 0
0
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2
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1.6k
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voom-limma workflow for RNAseq samples with very different numbers of counts
voom limma RNASeq
4.8 years ago annadv • 0
0
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5
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7.9k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
written 4.8 years ago by ▴ 10
3
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2
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1.3k
views
Multi-level comparisons with paired data: duplicateCorrelation or not?
limma
4.8 years ago Lluís Revilla Sancho ▴ 760
1
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7
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2.1k
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how to make a contrast of uniquely DE genes
edgeR limma RNA-seq DEGseq
4.9 years ago decppced • 0
0
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11
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4.2k
views
Hello, I'm having trouble in installing Limma package and this is what Im getting
limma
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by • 0
6
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4
replies
1.9k
views
Discrepancy in effect size calculation between ordinary Cohens D and LIMMA
CohensD power limma effectsize
4.9 years ago MoltenLight ▴ 10
5
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6
replies
6.5k
views
Differential protein/biomarker expression using limma: is that possible?
Proteomics NPX limma
updated 2.0 years ago by • 0 • written 4.9 years ago by ▴ 10
0
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1
reply
736
views
Is there is any distribution assumption for voom tranformed matrix?
limma
updated 4.9 years ago by 53k • written 4.9 years ago by • 0
6
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6
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2.6k
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.9 years ago by 53k • written 4.9 years ago by ▴ 10
3
votes
3
replies
2.0k
views
Weird MAplot with DEGs lying along the diagonals
limma Microarray AgilentChip MA-plot Normalization
4.9 years ago FedeXandeR • 0
0
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0
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1.3k
views
Limma design multi-level experiment with 3 time points
R proteomics limma
4.9 years ago ellen2270 • 0
0
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1
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1.4k
views
possible problem with mzR? cannot load Msnset for proteomics analysis
MSnbase mzR Bioconductor limma
updated 4.9 years ago by 1.6k • written 4.9 years ago by • 0
0
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3
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2.1k
views
add group info within DGE-object before TMM normalization
edgeR limma
updated 4.9 years ago by 53k • written 4.9 years ago by ▴ 40
0
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3
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3.3k
views
How to calculate coefficient of variation within group?
edgeR limma RNASeqPower
updated 3.9 years ago by 53k • written 4.9 years ago by ▴ 60
2
votes
3
replies
2.2k
views
ANOVA Limma
ANOVA limma
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 10
0
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2
replies
8.2k
views
TPM data in limma/voom
voom limma DifferentialExpression edgeR
4.9 years ago RJM • 0
3
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7
replies
2.0k
views
Getting differentially expressed genes for time points
edgeR DifferentialExpression limma
updated 4.9 years ago by 53k • written 4.9 years ago by ▴ 20
9
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4
replies
2.0k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
5.0 years ago snijesh ▴ 200
0
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0
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1.2k
views
limma on RNASeq time-series with patient and batch as blocking factor
duplicateCorrelation limma BatchEffect
5.0 years ago Julia • 0
1
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2
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2.0k
views
How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarray log values
interactions 3factors limma Microarray
5.0 years ago Dan ▴ 20
3
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9
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2.3k
views
limma analysis when only Cy5 was used
MicroarrayData limma Microarray
5.0 years ago Daniel.Schnell • 0
1
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1
reply
645
views
Creating a design matrix
limma
updated 5.0 years ago by 68k • written 5.0 years ago by • 0
3
votes
4
replies
4.9k
views
Using limma for the analysis of qPCR data
NormqPCR EasyqpcR qPCR HTqPCR limma
updated 4.3 years ago by ▴ 380 • written 5.0 years ago by ▴ 680
0
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0
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1.4k
views
Surrogate variable, celltype composition correction and overfitting in DNA methylation data
sva limma methylation MethylationArray
5.0 years ago epibio ▴ 10
2
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4
replies
2.9k
views
avereps function by limma package
limma
5.0 years ago lily ▴ 20
1
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2
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874
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Limma help (creating design matrix)
limma
5.0 years ago d808bc07 • 0
6
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6
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2.6k
views
Limma Paired Analysis - Force intercept to 0
MethylationArray limma
5.0 years ago MoltenLight ▴ 10
1
vote
1
reply
2.3k
views
Limma-Voom - Time series experiment with one group (duplicateCorrelation() function)
voom duplicateCorrelation() timeseries limma
updated 5.1 years ago by 53k • written 5.1 years ago by ▴ 10
2
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4
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2.4k
views
read.idat function misleading error when reading compressed files
idat illumina limma read.idat
updated 5.1 years ago by 53k • written 5.1 years ago by • 0
3
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1
reply
1.6k
views
Limma: extend reading raw Illumina files, with Gene Omnbus Expression formats
beadarray GSE22247 limma GEOquery IlluminaChip
updated 5.1 years ago by 53k • written 5.1 years ago by • 0
4,230 results • Page 10 of 85
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Thank you!
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I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
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