Showing : NGS • reset
7
votes
4
replies
6.9k
views
how can I tell if a RNAseq BAM file is paired end or single end ?
NGS BAm
updated 9.4 years ago by ▴ 390 • written 9.4 years ago by ▴ 50
4
votes
4
replies
2.3k
views
Average read counts and batch-effect correction in edgeR
edgeR batch-effect RNA-seq read counts ngs
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 20
2
votes
1
reply
1.5k
views
rtracklayer BigBed format
ngs rtracklayer bigbed
updated 5.3 years ago by ★ 11k • written 5.3 years ago by ▴ 100
1
vote
0
replies
1.6k
views
Job: Job Opening: Computational Biologists in Cambridge, MA and NYC
ngs computational biology R genomics bioinformatics Job
8.5 years ago mmartin ▴ 20
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 190 • written 3.5 years ago by • 0
1
vote
11
replies
2.5k
views
rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
rsubread BWA NGS
updated 7.6 years ago by ★ 3.6k • written 7.7 years ago by ▴ 10
1
vote
0
replies
2.2k
views
Job: Postdoctoral/Senior Scientist Position in New York City- Mount Sinai School of Medicine
genomics data integration job ngs computational biology Job
8.9 years ago supindab ▴ 10
1
vote
0
replies
1.3k
views
Job: Computational Biologist position in CRUK Manchester Institute, UK
ngs prostate cancer genomics computational biology bioinformatician job Job
6.8 years ago huisun.leong ▴ 10
1
vote
4
replies
1.7k
views
TarSeqQC TargetExperiment() Error- failed to stop SOCKcluster cluster-error writing to connection
TarSeqQC R ngs biocparallel
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 10
1
vote
0
replies
1.5k
views
News: Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
workshop ngs training News
9.6 years ago Thomas Girke ★ 1.7k
1
vote
0
replies
1.3k
views
Job: Computational Biologist position in CRUK Manchester Institute, UK
bioinformatician job ngs leukemia cancer Job
7.9 years ago Hui Sun Leong ▴ 10
0
votes
1
reply
1.6k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr bigwig coverage ngs
updated 6.6 years ago by ▴ 30 • written 6.6 years ago by • 0
0
votes
0
replies
1.2k
views
Job: Senior Bioinformatician, Children's Cancer Research Institute Vienna, Austria
postdoc rnaseq NGS WGS bioinformatician job Job
6.2 years ago da.de ▴ 30
0
votes
0
replies
1.2k
views
Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.1 years ago EMBL Recruitment • 0
0
votes
0
replies
1.3k
views
Job: EXTENDED: Bioinformatics Specialist at the University of Illinois
microbiome epigenomics bioinformatics analyst NGS Job
6.1 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
1.1k
views
counting reads with muliple hits with SummarizeOverlaps
R seq ngs summarizeoverlaps
updated 6.0 years ago by ★ 6.8k • written 6.1 years ago by • 0
0
votes
0
replies
957
views
Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql fastq seqinr ngs sangerseqr
6.0 years ago JoeMG • 0
0
votes
0
replies
1.9k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.8 years ago • updated 3.4 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
874
views
Job: Open position for a bioinformatician in Copenhagen
R NGS Job
5.7 years ago gretchen.repasky ▴ 20
0
votes
0
replies
1.3k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.2 years ago • updated 4.4 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
858
views
Job: Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines NGS Research associate Docker Job
4.8 years ago Daniel Brewer ▴ 100
0
votes
0
replies
991
views
Job: Two bioinformatics positions at Boston Children's Hospital
NGS Job
updated 3.5 years ago by 41k • written 3.5 years ago by • 0
0
votes
0
replies
657
views
Job: Bioinformatics Analyst/Data Science Analyst
bioinformatics ngsReports NGS analyst science
14 months ago marisona.almazan • 0
0
votes
0
replies
673
views
Rsamtools and data.table OR advice of packages
data.table Rsamtools NGS
2.3 years ago sara • 0
0
votes
0
replies
1.6k
views
Job: Associate Scientist - NGS Informatics @ AstraZeneca (Metro Boston, MA)
cancer translation ngs genomics Job
9.1 years ago jhjohnsn • 0
0
votes
0
replies
127
views
Job: PhD-position in bioinformatics / computational biology
Mergeomics Epigenome Evolution NGS Aging
19 days ago arne.sahm • 0
0
votes
0
replies
990
views
Job: Bioinformatician ('CHBIO15) (m/f)
bioinformatician job Linux NGS Job
5.4 years ago l.brown ▴ 10
0
votes
0
replies
1.7k
views
Job: Bioinformatician / NGS Data Analyst (Stark Group, Vienna, Austria)
bioinformatician job ngs genomics Job
9.0 years ago stark • 0
0
votes
5
replies
4.6k
views
bioconductor package for BWA-MEM ?
bwa ngs
updated 8.7 years ago by 50k • written 8.7 years ago by ▴ 50
0
votes
0
replies
1.4k
views
Job: Senior Research Associate in Bioinformatics, Norwich Medical School, UEA, UK
bioinformatician job biofilm NGS Job
8.7 years ago Daniel Brewer ▴ 100
0
votes
0
replies
2.0k
views
Job: Bioinformatics Data Analyst in Cancer Immunology
job NGS Data Analyst Cancer Job
8.2 years ago Jaritz,Markus ▴ 20
0
votes
0
replies
1.6k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.2 years ago Hui Sun Leong ▴ 10
0
votes
0
replies
1.4k
views
Job: 2015 Movember Foundation PhD Studentship in Bioinformatics @ UEA, Norwich, UK
Phd NGS cancer prostate Job
8.2 years ago Daniel Brewer ▴ 100
0
votes
0
replies
1.2k
views
Job: Bioinformatician / Statistician Position - Ref.: 2016/45 - in Badalona, Barcelona, Spain
ngs microarray bioinformatician job Job
7.8 years ago Lauro Sumoy ▴ 10
0
votes
0
replies
1.2k
views
Job: Hunting for Human Infectious Agents in Cancer using data from Genomics England's 100,000 genome project : PhD Studentship @ UEA, Norwich
phd cancer pathogens NGS Job
7.0 years ago Daniel Brewer ▴ 100
0
votes
6
replies
13k
views
converting fasta file into bam file
ngs
6.8 years ago nosheenfaiz09 • 0
36 results • Page 1 of 1
Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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