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Pathview
•
reset
2
votes
11
replies
6.1k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
8.5 years ago
Luo Weijun
★ 1.6k
0
votes
4
replies
3.1k
views
GAGE kegg.gsets function does not work: 'names' attribute [1] must be the same length as the vector [0]
gage
pathview
10.3 years ago
martin.hoelzer
▴ 20
2
votes
6
replies
4.1k
views
Fixing download.kegg, from pathview(), which returns empty xml
pathview
download.kegg()
xml
updated 10.3 years ago by
Luo Weijun
★ 1.6k • written 10.4 years ago by
lucmoitinho
• 0
0
votes
6
replies
4.9k
views
Error in using Pathview package. Do not print the pathways provided by GAGE analysis
gage
pathview
error
updated 9.6 years ago by
Luo Weijun
★ 1.6k • written 9.7 years ago by
marie.bordone
• 0
8
votes
13
replies
12k
views
Pathview: *** caught segfault *** cause 'memory not mapped'
pathview
segfault
updated 9.5 years ago by
redpick13
▴ 40 • written 10.1 years ago by
user31888
▴ 30
0
votes
5
replies
3.7k
views
Gene Symbol with Pathview
pathview
bioconductor
kegg
visualization
updated 10.2 years ago by
Luo Weijun
★ 1.6k • written 10.3 years ago by
abhinavbn
• 0
4
votes
6
replies
6.1k
views
Pathview unable to download pathways
clusterProfiler
KEGGgraph
clusterpr
KEGG
pathview
updated 3.4 years ago by
Guido Hooiveld
★ 4.1k • written 3.6 years ago by
rama
▴ 10
6
votes
5
replies
2.4k
views
KEGG analysis for plasmodium
KEGG
gage
gageData
pathview
updated 4.8 years ago by
Luo Weijun
★ 1.6k • written 4.8 years ago by
MOHAMMAD
• 0
0
votes
3
replies
3.1k
views
Pathview -- Error in korg[ridx, coln] : subscript out of bounds
pathview
korg
subscript out of bounds
Tutorial
updated 8.3 years ago by
Luo Weijun
★ 1.6k • written 8.3 years ago by
aacevedo
• 0
0
votes
4
replies
1.8k
views
Pathview published in Bioinformatics
Visualization
pathview
Visualization
pathview
12.6 years ago
Luo Weijun
★ 1.6k
0
votes
4
replies
3.3k
views
Drawing custom KEGG pathways
pathview
KEGG
written 4.7 years ago by
curiousmind007
▴ 10
4
votes
3
replies
4.3k
views
only 0's may be mixed with negative subscripts
pathview
updated 2.9 years ago by
saadatabu1996
▴ 10 • written 9.1 years ago by
nature.hunger
▴ 30
44
votes
29
replies
14k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db
pathview
updated 4.7 years ago by
Kevin Ushey
▴ 130 • written 4.8 years ago by
Arun
▴ 160
0
votes
2
replies
1.9k
views
ID unmatched in pathview
pathview
updated 8.7 years ago by
Mataivic
• 0 • written 8.7 years ago by
joseph
▴ 50
0
votes
14
replies
6.4k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub
AnnotationDbi
AnnotationForge
pathview
9.0 years ago • updated 3.4 years ago
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.7k
views
bug report in pathview
pathview
pathview
updated 11.2 years ago by
tao2013
• 0 • written 12.4 years ago by
Guest User
★ 13k
1
vote
3
replies
3.0k
views
Pathview pathview kegg.native=TRUE throws error in img
pathview
kegg
error
bioconductor
rnaseq
updated 8.2 years ago by
map2085
▴ 40 • written 8.9 years ago by
guillermo.marco
▴ 30
3
votes
5
replies
3.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview
clusterProfiler
KEGGpath
visualization
Graphviz
updated 10.2 years ago by
Luo Weijun
★ 1.6k • written 10.2 years ago by
svlachavas
▴ 840
0
votes
4
replies
2.1k
views
Argument gene.data for the correct implementation of fuction pathview of the pathview package
mroast
limma
pathview
pathway analysis
updated 10.8 years ago by
Luo Weijun
★ 1.6k • written 10.8 years ago by
svlachavas
▴ 840
3
votes
13
replies
4.4k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST
KEGG
gage
pathview
3.4 years ago • updated 3.0 years ago
nute11a
▴ 10
1
vote
2
replies
1.9k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
9.4 years ago
joanito.liberti
• 0
0
votes
5
replies
2.7k
views
pathview puzzle
Pathways
pathview
Pathways
pathview
12.4 years ago
Oleg Moskvin
▴ 60
2
votes
3
replies
6.0k
views
Pathview None of the genes or compounds mapped to the pathway
pathview
pathways
KEGG
empty map
updated 4.5 years ago by
najib
• 0 • written 10.1 years ago by
Dani
▴ 20
0
votes
3
replies
1.8k
views
pathview puzzle
PROcess
pathview
PROcess
pathview
updated 12.4 years ago by
Luo Weijun
★ 1.6k • written 12.4 years ago by
Oleg Moskvin
▴ 60
1
vote
2
replies
3.1k
views
Error in Pathview parsing: "Parsing ./ko00195.xml file failed, please check the file!"
pathview
KEGG
parsing
8.2 years ago
ladypurrsia
▴ 10
0
votes
3
replies
2.2k
views
Using pathview() with custom graphNEL objects
pathview
mirintegrator
10.3 years ago
prosomething
• 0
0
votes
7
replies
3.4k
views
Error in pathview - came out of nowhere without any source code modification
pathview
updated 8.7 years ago by
Luo Weijun
★ 1.6k • written 8.7 years ago by
Mataivic
• 0
0
votes
2
replies
2.1k
views
Pathview with non-KEGG organism
Annotation
pathview
Annotation
pathview
updated 12.3 years ago by
Luo Weijun
★ 1.6k • written 12.3 years ago by
Christian De Santis
▴ 150
0
votes
4
replies
2.8k
views
Error: Pathway analysis using Sleuth results
pathview
gage
rna-seq
R
sleuth
9.0 years ago
bioinf
▴ 10
4
votes
3
replies
3.1k
views
Pathview: Exporting non native KEGG pathway to PNG
pathview
bioconductor
graphics
graphviz
Pathview
updated 9.3 years ago by
dondelelcaro
▴ 10 • written 9.4 years ago by
guillermo.marco
▴ 30
1
vote
3
replies
2.3k
views
Discrepancy in gene set size between gage() and geneData()
gage
gene set analysis
pathview
kegg
pathway analysis
9.9 years ago
serpalma.v
▴ 60
0
votes
3
replies
2.2k
views
GAGE and PATHVIEW packages
gage
pathview
gage
pathview
updated 12.3 years ago by
Luo Weijun
★ 1.6k • written 12.3 years ago by
Christian De Santis
▴ 150
0
votes
1
reply
2.4k
views
pathview
Organism
convert
pathview
Organism
convert
pathview
updated 12.3 years ago by
Luo Weijun
★ 1.6k • written 12.3 years ago by
Hilary Smith
▴ 70
0
votes
2
replies
2.3k
views
Questions about Pathview, maybe also gage
Pathview
Gage
R
updated 9.1 years ago by
bioinf
▴ 10 • written 9.5 years ago by
ChIP-Tease
• 0
0
votes
2
replies
2.1k
views
GAGE and Pathview from RNA-Seq: 'ref.idx' and 'samp.idx' when no replicates
GAGE
pathview
updated 9.1 years ago by
Luo Weijun
★ 1.6k • written 9.1 years ago by
user31888
▴ 30
0
votes
1
reply
2.5k
views
Pathview - Problem with PNG output
Pathways
graph
pathview
Pathways
graph
pathview
updated 12.3 years ago by
Luo Weijun
★ 1.6k • written 12.3 years ago by
Christian De Santis
▴ 150
0
votes
1
reply
15k
views
operations are possible only for numeric, logical or complex types
hgu133plus2
pathview
hgu133plus2
pathview
updated 12.1 years ago by
Luo Weijun
★ 1.6k • written 12.1 years ago by
Guest User
★ 13k
0
votes
2
replies
4.7k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview
KEGG
annotation
gene symbol
visualization
updated 10.6 years ago by
Luo Weijun
★ 1.6k • written 10.6 years ago by
alakatos
▴ 130
1
vote
1
reply
2.4k
views
Pathview & topGO
R
GO
topGO
pathview
updated 9.4 years ago by
Luo Weijun
★ 1.6k • written 9.4 years ago by
cabezasdelafuented
▴ 10
0
votes
2
replies
2.0k
views
Pathview: Exporting non native KEGG pathway ignoring same.layer argument
Pathview
rgraphviz
graphviz
KEGG
updated 9.4 years ago by
Luo Weijun
★ 1.6k • written 9.4 years ago by
guillermo.marco
▴ 30
1
vote
1
reply
3.4k
views
Pathview color code and gene homolog handling?
pathview
updated 9.3 years ago by
Luo Weijun
★ 1.6k • written 9.4 years ago by
devang3110
• 0
2
votes
2
replies
3.8k
views
Why Pathview shows just red color (up-regulated genes) on a pathway?
Pathview
pathway analysis
differential gene expression
updated 9.6 years ago by
Luo Weijun
★ 1.6k • written 9.6 years ago by
Sara
▴ 20
0
votes
1
reply
1.8k
views
GAGE/Pathview now support 3000 KEGG species and 19 GO species (with BioC 2.14)
GO
gage
pathview
GO
gage
pathview
updated 10.6 years ago by
jackipchiho
▴ 10 • written 11.6 years ago by
Luo Weijun
★ 1.6k
0
votes
4
replies
4.2k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways
graph
PROcess
SIM
gage
pathview
Pathways
graph
PROcess
SIM
gage
pathview
updated 12.4 years ago by
Ed
▴ 230 • written 12.4 years ago by
Luo Weijun
★ 1.6k
1
vote
1
reply
2.3k
views
Using pathview with uncommon species leads to Errors
pathview
Kegg
rnaseq
data visualization
updated 9.5 years ago by
Luo Weijun
★ 1.6k • written 9.5 years ago by
rafre
• 0
1
vote
2
replies
2.7k
views
Please help with pathway analysis using Pathview
pathview
pathway analysis
updated 9.6 years ago by
Luo Weijun
★ 1.6k • written 9.6 years ago by
Sara
▴ 20
0
votes
1
reply
1.8k
views
How to perform pathway analysis of Candida albicans using pathview?
pathview
updated 10.0 years ago by
Luo Weijun
★ 1.6k • written 10.0 years ago by
daniel.molecular
• 0
0
votes
1
reply
1.6k
views
Using Gage and pathview with previously processed data
pathview
gage
r
kegg
rnaseq
updated 9.9 years ago by
Luo Weijun
★ 1.6k • written 9.9 years ago by
bsguida
• 0
0
votes
1
reply
2.1k
views
An. Gambie RNA-Seq differential expression using gage and pathview
Transcription
Annotation
Normalization
gage
pathview
Transcription
Annotation
Normalization
updated 11.5 years ago by
Saul Lozano
▴ 20 • written 11.5 years ago by
Luo Weijun
★ 1.6k
0
votes
3
replies
2.6k
views
pathview - plotting multiple samples in the same graph?
Pathways
GO
pathview
Pathways
GO
pathview
11.9 years ago
Peter Davidsen
▴ 210
146 results • Page
1 of 3
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