Showing : gene • reset
9
votes
10
replies
1.5k
views
Mapping of GENE symbols into ENTREZ
limma annotation Gene
4.7 years ago • updated 4.3 years ago omarrafiqued ▴ 50
6
votes
7
replies
2.2k
views
GEOquery reading error on Windows.
GEOquery GEO Gene
updated 2.5 years ago by 66k • written 2.5 years ago by ▴ 50
2
votes
5
replies
1.3k
views
DESeq2-result files (.csv): Is there a convention for the IDs (e.g. gene names if produced for genes)
deseq2 gene format
4.8 years ago miriam.mueller • 0
0
votes
5
replies
6.2k
views
Adding information to the DESeq2 output file (gene name and expression levels for each sample(
deseq2 gene columns output
updated 8.5 years ago by 42k • written 8.5 years ago by ▴ 10
5
votes
5
replies
1.9k
views
threeUTRsByTranscript per GENE
GenomicFeatures Transcript gene threeUTRsByTranscript
updated 3.3 years ago by ★ 1.5k • written 4.7 years ago by ▴ 10
1
vote
4
replies
1.1k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 4.7 years ago by ★ 1.4k • written 4.7 years ago by • 0
0
votes
4
replies
1.0k
views
Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by • 0
1
vote
4
replies
836
views
RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA gene RNASeqRData edgeR geneontology
19 months ago faiza • 0
2
votes
4
replies
975
views
Joint pathway Analysis using both gene and metabolite data sets
data integration gene metabolite
4.2 years ago emisecherre • 0
0
votes
3
replies
1.0k
views
PureCN gene LOH very common, amp/del not
PureCN gene amplification deletion loh
updated 4.0 years ago by ▴ 130 • written 4.0 years ago by ▴ 10
3
votes
3
replies
1.2k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 4.9 years ago by 66k • written 4.9 years ago by • 0
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.5 years ago by ▴ 210 • written 3.6 years ago by • 0
3
votes
2
replies
3.5k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray omim gene disorder
updated 9.1 years ago by ▴ 30 • written 9.2 years ago by ▴ 20
0
votes
2
replies
3.6k
views
Web Scraping From Pubmd (I want to extract gene articles form pubmed abstract and pubmed id i want to extract for number of genes)
cancer gene
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
6
votes
2
replies
2.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 5.1 years ago by 50k • written 5.1 years ago by ▴ 60
0
votes
2
replies
1.0k
views
I want to use global test.
gene r clst rpy globaltest
3.1 years ago Kim • 0
1
vote
2
replies
741
views
gene ontologies for a set of genes
gene ontology
2.8 years ago Bogdan ▴ 670
0
votes
2
replies
3.8k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 2.1 years ago by ▴ 20 • written 2.2 years ago by • 0
0
votes
2
replies
579
views
How to find the number of protein-coding genes in each chromosome arm in human?
gene chromosome proteincodinggene
13 months ago Liliian • 0
0
votes
2
replies
1.6k
views
How to filter the coding protein genes by EnsDb.Hsapiens.v86
EnsDb.Hsapiens.v86 gene
2.2 years ago beslinail • 0
3
votes
2
replies
553
views
please resolve the issue
gene ExpressionData
updated 14 months ago by 66k • written 14 months ago by • 0
0
votes
1
reply
840
views
WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 20 months ago by ▴ 50 • written 21 months ago by ▴ 20
0
votes
1
reply
314
views
gene aligning reference
geneRecommender gene
updated 6 months ago by 66k • written 6 months ago by • 0
0
votes
0
replies
540
views
Gene expression changes in one condition
RNASeq Gene ExpressionData
2.5 years ago AZ ▴ 30
0
votes
0
replies
470
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
13 months ago Priya • 0
0
votes
0
replies
641
views
TFutils database
TFutils mouse gene convert
3.0 years ago nicocillari • 0
26 results • Page 1 of 1
Recent ...
Replies
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Comment: ChAMP installation issue by Tahirah • 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k
Yes, you can use `limma`.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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