Showing : graph • reset
0
votes
3
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981
views
Representation of self-loops and the calculation of degrees
graph
updated 7 months ago by 6.7k • written 16 months ago by • 0
2
votes
4
replies
4.6k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny graph RBGL
updated 13 months ago by ▴ 10 • written 3.2 years ago by • 0
0
votes
1
reply
957
views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro graph
updated 3.4 years ago by ▴ 90 • written 3.4 years ago by • 0
3
votes
3
replies
1.7k
views
Can't install graph package
graph
updated 4.0 years ago by 25k • written 4.0 years ago by ▴ 10
1
vote
2
replies
941
views
Library for Node Influence package
Graph gene regulatory network node influence gene ranking
updated 4.4 years ago by ★ 3.9k • written 4.4 years ago by ▴ 50
0
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0
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984
views
igraph PoTRA error
graph pathways igraph
6.1 years ago genomic8328 ▴ 10
1
vote
4
replies
2.1k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
written 6.1 years ago by • 0
1
vote
1
reply
1.1k
views
How to get the list of the components of all containers from the active RedeR session?
reder graph
updated 6.5 years ago by ▴ 10 • written 6.6 years ago by ▴ 10
0
votes
1
reply
1.1k
views
CRISPRseek How to get a correct result of searchHits2 ?
crisprseek graph
updated 6.8 years ago by ★ 4.3k • written 6.8 years ago by • 0
0
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1
reply
1.2k
views
Visualizing Linear Model Coefficients in R
R deseq2 graph linear model
updated 6.9 years ago by 41k • written 6.9 years ago by • 0
2
votes
3
replies
3.4k
views
How to convert graphNEL object into Adjacency Matrix?
graph kegggraph xml
updated 7.0 years ago by ★ 3.3k • written 7.0 years ago by • 0
2
votes
2
replies
2.3k
views
Best practices for converting adj matrix -> graphNEL
graph adjacency matrix
7.4 years ago bryon ▴ 10
1
vote
1
reply
1.1k
views
Fastest way to get the distances between pairs of graph nodes
graph rgbl dag
updated 7.4 years ago by ★ 13k • written 7.4 years ago by ▴ 110
0
votes
1
reply
1.1k
views
ChIPseeker plotAvgProf2: order of panels
graph
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by ▴ 30
0
votes
1
reply
2.1k
views
Gviz Sashimi Plot height/colour/count
graph gviz
updated 7.6 years ago by ▴ 730 • written 7.9 years ago by ▴ 10
0
votes
1
reply
1.1k
views
plot pdf error
graph
updated 8.1 years ago by ★ 1.0k • written 8.1 years ago by • 0
3
votes
2
replies
2.5k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 8.1 years ago by ★ 3.0k • written 8.1 years ago by ▴ 150
0
votes
2
replies
1.9k
views
cummRbund MDSplot error
software error graph R cummerbund
updated 8.4 years ago by • 0 • written 8.4 years ago by • 0
2
votes
2
replies
1.8k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Graph isomorphism in Rcytoscape
graph isomorphism in Rcytoscape
updated 8.8 years ago by ▴ 760 • written 8.8 years ago by • 0
0
votes
1
reply
2.0k
views
Graph viewer for Reactome Pathways
bioconductor package reactome graph
updated 8.9 years ago by ★ 2.0k • written 8.9 years ago by ▴ 10
0
votes
5
replies
2.0k
views
R plot error
r bioconductor graph plot data representation in graphical forms
8.9 years ago megha.24may • 0
0
votes
2
replies
1.9k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph omiccircos
updated 9.2 years ago by ▴ 50 • written 9.2 years ago by • 0
2
votes
2
replies
2.1k
views
GO offspring consistency
annotation GO graph gene ontology
updated 9.4 years ago by 1.6k • written 9.4 years ago by • 0
0
votes
3
replies
1.6k
views
generating graph with different rown ames and column names
graph rgraphviz
updated 9.5 years ago by 16k • written 9.5 years ago by • 0
0
votes
4
replies
2.3k
views
Error for plotDEXSeq and warning for estimateDispersions
graph DEXSeq
updated 9.6 years ago by ★ 1.9k • written 9.6 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Problem in K- means clustering
hgu133plus2 graph hgu133plus2 graph
updated 9.7 years ago by ▴ 390 • written 9.7 years ago by ▴ 10
0
votes
0
replies
1.1k
views
bug in graph::removeEdge() on UGs with graphBAM objects
graph graph
9.7 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
1.3k
views
updating edge visualization rules of an existing graph in RedeR
graph RedeR graph RedeR
updated 9.7 years ago by ▴ 10 • written 9.7 years ago by ▴ 200
0
votes
1
reply
1.3k
views
Sciplot: Increasing the width of bargraph and decreasing the sapce b/n groups
graph graph
updated 10.0 years ago by 65k • written 10.0 years ago by ▴ 130
0
votes
5
replies
3.5k
views
Gviz AnnotationTrack - Consistent y-scales
Coverage Annotation graph Gviz Coverage Annotation graph Gviz
updated 10.0 years ago by ▴ 130 • written 10.0 years ago by ▴ 350
0
votes
0
replies
1.3k
views
Rgraphviz compilation error
graph Rgraphviz PROcess graph Rgraphviz PROcess
10.0 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
0
replies
1.4k
views
Plotting per base coverage from genomecoveragebed utility
graph graph
10.0 years ago gv ▴ 40
0
votes
9
replies
2.9k
views
Rgraphviz compilation error
graph graph
updated 10.0 years ago by ▴ 70 • written 10.0 years ago by ★ 13k
0
votes
5
replies
1.7k
views
problem with makeGOGraph function
Yeast graph GOstats Yeast graph GOstats
updated 10.1 years ago by 65k • written 10.1 years ago by ★ 13k
0
votes
0
replies
1.8k
views
edgeR: regarding Poisson distribution and goodness of
Normalization graph edgeR Normalization graph edgeR
10.2 years ago Yunshun Chen ▴ 840
0
votes
0
replies
1.3k
views
edgeR: regarding Poisson distribution and goodness of fit graph
Normalization graph edgeR Normalization graph edgeR
10.2 years ago Guest User ★ 13k
0
votes
1
reply
1.4k
views
how to determine what kind of dispersion to use
graph edgeR graph edgeR
updated 10.2 years ago by ★ 7.9k • written 10.2 years ago by ★ 13k
0
votes
5
replies
4.7k
views
Problem with exporting graph from plotPCA() in a DESeq2 function
graph DESeq2 graph DESeq2
updated 10.2 years ago by 41k • written 10.2 years ago by ★ 13k
0
votes
2
replies
2.1k
views
What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression
Visualization graph limma Visualization graph limma
updated 10.2 years ago by 50k • written 10.2 years ago by ▴ 30
0
votes
1
reply
1.2k
views
FLowClust/FLowCore
graph flowCore graph flowCore
updated 10.3 years ago by ★ 1.3k • written 10.3 years ago by ★ 13k
0
votes
0
replies
1.6k
views
pathview vectorized output?
Pathways graph pathview Pathways graph pathview
10.3 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
1.3k
views
Statistics questions regarding the use of Ambion ExFold ERCC standards with Affmetrix ST arrays.
Normalization vsn graph Normalization vsn graph
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 350
0
votes
4
replies
2.0k
views
RCytoscape: object 'graph' not found error
graph RCytoscape graph RCytoscape
updated 10.3 years ago by ▴ 470 • written 10.3 years ago by ▴ 210
0
votes
1
reply
1.3k
views
bug in graph::addNode() w/ graph::edgeData()
graph graph
updated 10.4 years ago by ★ 3.3k • written 10.4 years ago by ▴ 750
0
votes
2
replies
1.4k
views
bug in graph::addNode() w/ graph::edgeData()
graph graph
updated 10.5 years ago by ▴ 750 • written 10.5 years ago by ★ 3.3k
0
votes
2
replies
2.8k
views
pathview -- ID Problem?
graph pathview graph pathview
updated 10.5 years ago by ▴ 40 • written 10.5 years ago by ★ 1.6k
0
votes
6
replies
3.5k
views
Directed MST (Edmond's Algorithm)
GO graph RBGL GO graph RBGL
updated 10.5 years ago by ★ 13k • written 10.5 years ago by ▴ 90
0
votes
1
reply
2.2k
views
deseq2 plotMA
GO graph DESeq2 GO graph DESeq2
updated 10.5 years ago by 41k • written 10.5 years ago by ▴ 310
2
votes
1
reply
1.9k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 6.2 years ago by • 0 • written 10.6 years ago by ★ 1.6k
50 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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