Showing : metabolomics • reset
5
votes
7
replies
1.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 4.8 years ago by ★ 2.0k • written 4.8 years ago by ▴ 30
4
votes
7
replies
1.3k
views
Issues uploading database for metabolomic data analysis with Pathway Activity Profiling - PAPi
papi metabolomics pathway analysis
updated 5.5 years ago by ▴ 10 • written 6.3 years ago by ▴ 10
3
votes
2
replies
2.1k
views
limma for metabolite data
limma metabolomics limma paired analysis
updated 9 months ago by • 0 • written 5.3 years ago by • 0
3
votes
3
replies
1.6k
views
installing xcms and faahKO package
metabolomics
updated 4.9 years ago by 1.5k • written 4.9 years ago by ▴ 10
3
votes
0
replies
1.0k
views
Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
22 months ago Johannes Rainer ★ 2.0k
2
votes
9
replies
1.8k
views
Unexpected total ion count (TIC) with xcms package
xcms metabolomics
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ★ 2.0k
2
votes
0
replies
433
views
Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
23 months ago Johannes Rainer ★ 2.0k
1
vote
3
replies
1.9k
views
XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
6.6 years ago Titan • 0
1
vote
4
replies
1.7k
views
How to get from xcmsRaw to a xcmsSet
xcms metabolomics
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ★ 2.0k
1
vote
2
replies
451
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
20 months ago • updated 19 months ago Oliver • 0
1
vote
0
replies
296
views
Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics lipidomics clinical research data integration biostatistics Job
2.5 years ago Tommi Suvitaival ▴ 10
1
vote
2
replies
850
views
Package won't recognise raw data files
camera metabolomics r
4.7 years ago bhgyu ▴ 30
1
vote
0
replies
511
views
Normalization of metabolomics/lipidomics data for limma
Lipidomics Metabolomics limma Normalization
13 months ago pgugger ▴ 60
0
votes
3
replies
1.8k
views
Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms metabolomics
7.3 years ago Johannes Rainer ★ 2.0k
0
votes
0
replies
1.3k
views
Job: Data scientist/bioinformatician - Paris
Genomics metabolomics biostatistics data integration Job
6.8 years ago David Enot ▴ 30
0
votes
4
replies
2.0k
views
mzR could not be loaded on XCMS
xcms msdata mzR Rcpp metabolomics
6.6 years ago Titan • 0
0
votes
4
replies
2.0k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
6.6 years ago Titan • 0
0
votes
3
replies
1.4k
views
Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
6.6 years ago Titan • 0
0
votes
0
replies
828
views
fillPeaks not calculating "intb" values.
xcms metabolomics
6.5 years ago Johannes Rainer ★ 2.0k
0
votes
6
replies
1.8k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
6.3 years ago dfrtyu • 0
0
votes
1
reply
1.0k
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 6.2 years ago by ▴ 20 • written 6.2 years ago by • 0
0
votes
1
reply
861
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 5.8 years ago by 60k • written 5.8 years ago by • 0
0
votes
2
replies
1.2k
views
Extracting subclusters from original data
complexheatmap metabolomics
updated 5.0 years ago by ▴ 120 • written 5.1 years ago by • 0
0
votes
1
reply
629
views
MAIT or Specmine
metabolomics mait specmine mass spectrometry
4.8 years ago bhgyu ▴ 30
0
votes
0
replies
635
views
CAMERA error - isotopeProportionFits
camera metabolomics
4.6 years ago bhgyu ▴ 30
0
votes
0
replies
619
views
Job: Postdoctoral Position: Posttranscriptional gene regulation in T cells (analysis of RNAseq, metabolomics)
Basel switzerland RNAseq metabolomics Job
4.3 years ago Robert Ivanek ▴ 730
0
votes
1
reply
905
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 4.3 years ago by ★ 2.0k • written 4.3 years ago by • 0
0
votes
0
replies
495
views
'names' attribute must be the same length as the vector - PAPi problems
PAPi metabolomics pathway analysis raphael
4.1 years ago maryke.wijma • 0
0
votes
0
replies
844
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 3.6 years ago by • 0 • written 3.7 years ago by ★ 2.0k
0
votes
0
replies
508
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
3.5 years ago Johannes Rainer ★ 2.0k
0
votes
0
replies
410
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
3.4 years ago Wuschel ▴ 10
0
votes
5
replies
609
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 2.9 years ago by 1.5k • written 2.9 years ago by • 0
0
votes
4
replies
338
views
ProFIA package error for noise estimation
software error proFIA HRMS FIA Metabolomics
updated 2.2 years ago by 3.6k • written 2.2 years ago by • 0
0
votes
0
replies
63
views
Plot of variable importance
Metabolomics
25 days ago Eddie • 0
0
votes
1
reply
229
views
OPLS-DA permutation test
Metabolomics
updated 3 months ago by ▴ 20 • written 3 months ago by • 0
0
votes
0
replies
127
views
Job: Director of Metabolomics, University of Illinois Urbana-Champaign
Metabolomics
4 months ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
37
views
Negative Q2Y
Metabolomics
23 days ago Eddie • 0
0
votes
2
replies
248
views
variableMetadata for metabolites dataset
Metabolomics
updated 3 months ago by • 0 • written 5 months ago by • 0
0
votes
12
replies
575
views
VST transformation (DESeq2) for metabolomics data
vst Metabolomics DESeq2
3 months ago Joan Miró • 0
0
votes
1
reply
253
views
Permutation test for OPLS-DA
Metabolomics
updated 3 months ago by ▴ 20 • written 5 months ago by • 0
0
votes
5
replies
336
views
ROC plot for OPLS-DA
Metabolomics
updated 8 weeks ago by ▴ 20 • written 4 months ago by • 0
0
votes
1
reply
339
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR PLS OPLS Metabolomics ropls
updated 12 months ago by ▴ 20 • written 12 months ago by • 0
0
votes
1
reply
31
views
OPLS-DA: confidence interval for accuracy metric
Metabolomics
updated 1 day ago by ▴ 20 • written 3 days ago by • 0
0
votes
1
reply
223
views
OPLS-DA for paired samples
Metabolomics
updated 3 months ago by ▴ 20 • written 5 months ago by • 0
0
votes
1
reply
283
views
compute molecular mass from chemical formula
Metabolomics
written 15 months ago by ▴ 10
0
votes
4
replies
411
views
OPLS-DA: values of pR2Y and pR2Q
Metabolomics
5 months ago • updated 9 weeks ago Eddie • 0
0
votes
0
replies
943
views
Bioconductor 2.4 is released
Microarray qPCR Metabolomics Annotation Normalization graph flowCore Microarray qPCR
13.3 years ago Patrick Aboyoun 1.6k
0
votes
1
reply
87
views
Code for the Q2Ys from permutation test
Metabolomics
updated 9 weeks ago by ▴ 20 • written 9 weeks ago by • 0
0
votes
0
replies
2.1k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics Metabolomics Pathways Cancer Genetics Metabolomics Pathways Cancer
10.9 years ago Emilie Bard ▴ 10
0
votes
0
replies
956
views
PLGEM on metabolomic data?
miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem
9.9 years ago Norman Pavelka ▴ 140
50 results • Page 1 of 1
Recent ...
Replies
Comment: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Comment: error running UniProt.ws by James W. MacDonald 60k
Or maybe it is a quick fix! Nicely done Marcel!
Answer: Error with TCGA package - TCGAbiolinks by Tiago C. Silva ▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
Comment: Error with TCGA package - TCGAbiolinks by Marcel Ramos 570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
Answer: error running UniProt.ws by Marcel Ramos 570
I've updated the package to handle these requests on both Bioc devel and release 3.15. Let me know if you have any issues. Best, M…
Votes
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
Answer: Extract specific portion of a string and paste to a new column in R
Answer: lapply for GRanges
Awards • All
Centurion to Marcel Ramos 570
Scholar to Gordon Smyth 46k
Popular Question to sunnykevin97 • 0
Popular Question to Alejandro Reyes ★ 1.8k
Popular Question to Leonardo Collado Torres ▴ 1000
Locations • All
United States, 8 minutes ago
Zheng Zhou, 50 minutes ago
WEHI, Melbourne, Australia, 54 minutes ago
United States, 2 hours ago
Canada, 3 hours ago
Traffic: 178 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6