Showing : methylationarrayanalysis • reset
0
votes
2
replies
185
views
Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 19 days ago by 68k • written 20 days ago by • 0
0
votes
2
replies
308
views
Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
6 weeks ago a.alkema • 0
0
votes
1
reply
190
views
Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 8 weeks ago by 68k • written 8 weeks ago by • 0
0
votes
13
replies
1.4k
views
When doing differential methylation using the sesame package, seems to only go one way
methylation sesame methylationArrayAnalysis
updated 6 months ago by ▴ 20 • written 6 months ago by ▴ 10
1
vote
2
replies
751
views
In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
6 months ago ramiro.barrantes ▴ 10
0
votes
1
reply
442
views
Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 6 months ago by 68k • written 6 months ago by ▴ 10
0
votes
1
reply
673
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 3 months ago by • 0 • written 8 months ago by • 0
0
votes
7
replies
1.8k
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
11 months ago hortense96 • 0
1
vote
1
reply
1.4k
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 13 months ago by 68k • written 13 months ago by • 0
1
vote
4
replies
1.3k
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
13 months ago mikat • 0
2
votes
4
replies
1.4k
views
Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 15 months ago by 52k • written 15 months ago by • 0
3
votes
6
replies
1.3k
views
Methylation data analysis
MethylationArrayData methylationArrayAnalysis
16 months ago aldea85 • 0
0
votes
1
reply
1.2k
views
EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 17 months ago by 68k • written 17 months ago by • 0
1
vote
3
replies
1.0k
views
Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
1
reply
3.8k
views
Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 20 months ago by ★ 4.7k • written 20 months ago by ▴ 10
1
vote
2
replies
939
views
edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
20 months ago Krzysztof • 0
1
vote
2
replies
1.2k
views
How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
21 months ago Irene • 0
1
vote
1
reply
864
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 23 months ago by ▴ 40 • written 23 months ago by • 0
2
votes
6
replies
1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 23 months ago by ▴ 230 • written 23 months ago by • 0
0
votes
2
replies
1.5k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
23 months ago • updated 22 months ago arisarkar88 ▴ 40
0
votes
1
reply
866
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 24 months ago by 52k • written 24 months ago by • 0
0
votes
1
reply
933
views
specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
5
votes
1
reply
2.0k
views
Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 14 months ago by • 0 • written 2.0 years ago by ▴ 80
0
votes
4
replies
1.6k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
votes
5
replies
1.9k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.1 years ago by • 0
0
votes
1
reply
909
views
Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 2.3 years ago by ★ 2.0k
0
votes
3
replies
4.1k
views
Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 20 months ago by • 0 • written 2.4 years ago by • 0
0
votes
7
replies
3.5k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.4 years ago by 68k • written 2.9 years ago by • 0
0
votes
0
replies
971
views
filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.0 years ago Jitendra ▴ 10
0
votes
0
replies
1.2k
views
getsex function error.
QualityControl methylationArrayAnalysis
3.1 years ago zusman • 0
2
votes
4
replies
1.7k
views
How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
3.1 years ago Jojo • 0
0
votes
6
replies
4.3k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.7 years ago FWNL15 • 0
0
votes
2
replies
1.2k
views
Limma experiment design and making contrasts
limma methylationArrayAnalysis
4.0 years ago Kesava • 0
1
vote
8
replies
1.9k
views
EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
4.0 years ago chay • 0
0
votes
2
replies
1.7k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
4.0 years ago arisarkar88 ▴ 40
0
votes
2
replies
1.1k
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
4.1 years ago sissialva21 • 0
2
votes
7
replies
3.3k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 17 months ago by • 0 • written 4.3 years ago by ▴ 20
1
vote
1
reply
1.5k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
38 results • Page 1 of 1
Recent ...
Replies
Comment: Ensembl site unresponsive via biomaRt by Mike Smith ★ 6.6k
Can you try updating the **curl** package to the latest version. The `curl_parse_url()` function was only added in version 6.0 and you're …
Answer: best way to grouping GSM belonging to different datasets (with different platfor by James W. MacDonald 68k
The only defensible way is to make comparisons within experiments and then do a meta-analysis. But that assumes you have identified multipl…
Comment: DESeq2 estimateSizeFactors with control genes by sofia.rigou • 0
I am also trying to use this function to estimate sizefactor based on RT-dPCR data but estimateSizeFactor only takes integers. Should I mul…
Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
Awards • All
Popular Question to Elizabeth • 0
Popular Question to Kent • 0
Popular Question to Gordon Smyth 52k
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to L ▴ 50
Locations • All
Taiwan, 2 minutes ago
Singapore, 5 minutes ago
United States, 8 minutes ago
EMBL Heidelberg, 11 minutes ago
United States, 30 minutes ago
Traffic: 836 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6