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Join the Technical Advisory Board
Bioconductor
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Organization
12 months ago • updated 11 months ago
Maria Doyle
▴ 70
1
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499
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News:
Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
Training
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12 months ago
Maria Doyle
▴ 70
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3
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News:
European Bioconductor Conference 2023 planning
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EuroBioC
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updated 12 days ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
▴ 70
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News:
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Asia
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19 months ago • updated 18 months ago
Peter Hickey
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News:
New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight
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BiocVersion
3.1 years ago
Matthew Ritchie
▴ 1000
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0
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1000
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News:
Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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Conference
3.2 years ago
Matthew Ritchie
▴ 1000
4
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2.2k
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News:
Join the Bioconductor Community Advisory Board
bioconductoroversight
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BiocVersion
news
updated 3.2 years ago by
aedin
• 0 • written 3.3 years ago by
Matthew Ritchie
▴ 1000
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731
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News:
SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
support site
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3.5 years ago
shepherl
3.9k
2
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3
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1.0k
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
helenhuang.math
• 0
0
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0
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735
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News:
BridgeDbR devel package upgraded to BridgeDb 3
bridgedbr
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3.5 years ago
egon.willighagen
▴ 10
0
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1
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951
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News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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3.6 years ago
kayla.interdonato
▴ 160
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985
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News:
Project-wide Code of Conduct statement for Bioconductor
Coc
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conduct
Bioconductor
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3.6 years ago
Laurent Gatto
1.6k
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2
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1.4k
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News:
Final List of Deprecated Packages for Bioc3.12
annotation
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experimentdata
deprecated
News
3.6 years ago • updated 3.5 years ago
shepherl
3.9k
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989
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News:
New Package Submission Deadline for Bioc Release 3.12
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new package
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3.6 years ago
shepherl
3.9k
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Bioconductor Release 3.12 Schedule Posted
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3.7 years ago
shepherl
3.9k
2
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1.1k
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News:
BioCAsia Virtual Meeting, 15-18 October 2020
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written 3.7 years ago by
Matthew Ritchie
▴ 1000
3
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0
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1.4k
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News:
List of Deprecated Packages for Bioc3.12
annotation
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News
3.7 years ago • updated 3.6 years ago
shepherl
3.9k
4
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2
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1.6k
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News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
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AnnotationHub
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3.7 years ago
Johannes Rainer
★ 2.0k
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951
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News:
Ensembl 101 hase been released
Ensembl
BioMart
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3.7 years ago
mchakiachvili
▴ 20
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774
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News:
James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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3.8 years ago
Kasper Daniel Hansen
★ 6.5k
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3
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1.1k
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News:
New Package Submission Workflow Updates!
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bioconductor
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updated 2.8 years ago by
jonathan.dekermanjian
• 0 • written 3.8 years ago by
shepherl
3.9k
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Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
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3.9 years ago
shepherl
3.9k
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806
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News:
Award Nomination Deadline Monday June 15th!
bioc2020
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3.9 years ago
shepherl
3.9k
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0
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754
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Scientific or Informatic Technology Advancement Award!
bioconductor
bioc2020
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3.9 years ago
shepherl
3.9k
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799
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Long-term contribution award
bioc2020
bioconductor
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3.9 years ago
shepherl
3.9k
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1.0k
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Community engagement and outreach award
bioconductor
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written 3.9 years ago by
shepherl
3.9k
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747
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News:
Documentation Bioconductor Award
bioconductor
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documentation
News
3.9 years ago
shepherl
3.9k
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0
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822
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News:
List of Deprecated Packages for Bioc3.12
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News
3.9 years ago
shepherl
3.9k
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0
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801
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News:
New Package Bioconductor Award
bioconductor
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3.9 years ago
shepherl
3.9k
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0
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739
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News:
Support Site Bioconductor Award
bioconductor
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3.9 years ago
shepherl
3.9k
0
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0
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750
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Bioc2020 - Virtual Conference Registration
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3.9 years ago
shepherl
3.9k
0
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0
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710
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News:
Updated annotation packages
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3.9 years ago
kayla.interdonato
▴ 160
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0
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659
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Single Package Builder / New Package Submission
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3.9 years ago
shepherl
3.9k
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860
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News:
Bioconductor Technical Advisory Board Nominees, 2020
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written 3.9 years ago by
Martin Morgan
25k
4
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717
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Public Calendar of Events
Bioconductor
events
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4.0 years ago
shepherl
3.9k
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1.2k
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News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
annotation
ensembldb
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4.0 years ago
Johannes Rainer
★ 2.0k
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1
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919
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News:
Issues with annotation packages
annotation
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4.0 years ago
kayla.interdonato
▴ 160
0
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0
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875
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News:
Bioconductor 3.11 OrgDb and TxDb packages now available
annotation
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4.0 years ago
kayla.interdonato
▴ 160
1
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0
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788
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News:
Ensembl 100 has been released
biomart
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e100
mart
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4.0 years ago
Thomas Maurel
▴ 800
4
votes
0
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816
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News:
Bioconductor 3.11 is Released!
software
bioconductor
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4.0 years ago
shepherl
3.9k
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0
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878
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News:
Import Deadlines for RELEASE 3.11
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devel
deadline
bioconductor
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4.0 years ago
shepherl
3.9k
4
votes
1
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3.8k
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News:
Nominations for Bioconductor Awards!
Bioc2020
Bioconductor
Awards
Recognition
News
4.0 years ago • updated 3.9 years ago
shepherl
3.9k
10
votes
0
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2.7k
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News:
Professor James Taylor
in memoriam
News
4.1 years ago
Martin Morgan
25k
0
votes
0
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852
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News:
Last Day to Submit New Packages for Bioconductor Release 3.11
deadline
new submission
bioconductor
release
News
4.1 years ago
shepherl
3.9k
2
votes
0
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824
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News:
Bioconductor Community Advisory Board Members
news
bioconductor oversight
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News
4.1 years ago
Matthew Ritchie
▴ 1000
1
vote
2
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2.5k
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections
conference
bioc2020
talks
deadline
News
4.1 years ago • updated 3.9 years ago
shepherl
3.9k
0
votes
3
replies
1.0k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 4.0 years ago by
kayla.interdonato
▴ 160 • written 4.1 years ago by
shepherl
3.9k
0
votes
0
replies
739
views
News:
Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release
devel
bioconductor
News
4.1 years ago
shepherl
3.9k
0
votes
0
replies
698
views
News:
Bioconductor Release 3.10 Code Freeze Deadline
release
deadline
bioconductor
News
4.1 years ago
shepherl
3.9k
0
votes
0
replies
666
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News:
Bioconductor 3.11 db0s are available
annotation
db0
news
release
News
4.1 years ago
kayla.interdonato
▴ 160
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Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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