Showing : openCyto • reset
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345
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Deprecated Gates- tailgate
openCyto
13 months ago ztflaten • 0
0
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0
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621
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OpenCyto polyFunctions
openCyto
2.3 years ago Albert • 0
0
votes
0
replies
946
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
3.0 years ago Dennis.hinkel • 0
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1
reply
1.2k
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 3.1 years ago by ★ 4.0k • written 3.1 years ago by • 0
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0
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835
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
3.1 years ago Noël • 0
0
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0
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763
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openCyto 2.8.0: error in prior_flowclust
prior_flowclust openCyto
3.4 years ago martin.andres • 0
0
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2
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1.0k
views
openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
5.5 years ago geoffreylewen • 0
0
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1
reply
1.1k
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 5.5 years ago by ▴ 310 • written 5.6 years ago by • 0
7
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3
replies
2.1k
views
Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by ▴ 30
4
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5
replies
1.9k
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Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by • 0
1
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5
replies
2.1k
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custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
6.3 years ago k.teijgeler • 0
5
votes
11
replies
2.7k
views
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
updated 6.5 years ago by ★ 1.3k • written 6.5 years ago by • 0
0
votes
6
replies
2.2k
views
How to select left hand side of mindensity2 gate
openCyto mindensity
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 20
0
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7
replies
2.2k
views
RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
updated 6.8 years ago by ★ 1.3k • written 6.9 years ago by • 0
3
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3
replies
2.4k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 7.2 years ago by ★ 1.3k • written 8.1 years ago by ▴ 10
0
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4
replies
3.3k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 7.7 years ago by ★ 1.3k • written 8.1 years ago by ▴ 70
0
votes
6
replies
2.4k
views
opencyto Error in .validity_check_alias
opencyto
updated 8.1 years ago by ★ 1.3k • written 8.1 years ago by ▴ 20
2
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5
replies
2.5k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 8.3 years ago by ★ 1.3k • written 8.3 years ago by ▴ 10
1
vote
5
replies
2.6k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 8.3 years ago by ★ 1.3k • written 8.3 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Fail to load openCyto
opencyto bioconductor
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 10
0
votes
1
reply
3.0k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
updated 8.4 years ago by ★ 1.3k • written 8.4 years ago by • 0
1
vote
1
reply
1.7k
views
Add flowclust gate to gatingset
opencyto flowclust
updated 8.4 years ago by ★ 1.3k • written 8.4 years ago by ▴ 20
2
votes
1
reply
1.5k
views
openCyto displaying gating panels
opencyto
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
2
votes
1
reply
1.4k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
updated 8.8 years ago by ★ 1.3k • written 8.9 years ago by • 0
2
votes
4
replies
1.8k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 8.9 years ago by ★ 1.3k • written 8.9 years ago by • 0
1
vote
4
replies
2.0k
views
openCyto trouble importing xml file
opencyto bioconductor R
9.0 years ago • updated 8.9 years ago Rivka • 0
0
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1
reply
1.6k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 9.3 years ago by ★ 1.3k • written 9.3 years ago by • 0
1
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5
replies
2.3k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 9.5 years ago by • 0 • written 9.6 years ago by ▴ 30
0
votes
1
reply
2.9k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 9.5 years ago by ★ 1.3k • written 9.5 years ago by • 0
1
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3
replies
2.0k
views
OpenCyto - getting gate coordinates
opencyto
9.6 years ago Ulrik Stervbo ▴ 30
2
votes
1
reply
2.2k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 9.6 years ago by ▴ 10 • written 9.6 years ago by ▴ 10
0
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1
reply
2.3k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
9.7 years ago Jiang, Mike ★ 1.3k
1
vote
2
replies
1.6k
views
openCyto - samples with low cell counts
flowcytometry opencyto
9.8 years ago Jiang, Mike ★ 1.3k
0
votes
3
replies
2.5k
views
openCyto: compilation failure during installation
opencyto rhdf5 compilation error
9.9 years ago • updated 9.8 years ago gmirkin • 0
1
vote
9
replies
4.2k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
9.9 years ago anders.tondell ▴ 30
4
votes
8
replies
3.7k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
updated 10.0 years ago by ▴ 240 • written 10.0 years ago by • 0
0
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5
replies
2.5k
views
openCyto fails to load
opencyto bioclite
updated 10.0 years ago by • 0 • written 10.1 years ago by ▴ 20
0
votes
4
replies
2.0k
views
Issues parsing workspace in openCyto
opencyto
10.3 years ago JK ▴ 10
0
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0
replies
1.7k
views
openCyto transitional gate
flow cytometry opencyto
10.6 years ago Jiang, Mike ★ 1.3k
0
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0
replies
1.7k
views
Re: FlowStats help
flowclust opencyto flowcytometry
10.7 years ago Jiang, Mike ★ 1.3k
5
votes
4
replies
3.8k
views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
updated 10.9 years ago by ▴ 150 • written 10.9 years ago by ▴ 10
4
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1
reply
2.1k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
11.2 years ago Greg Finak ▴ 150
1
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0
replies
2.0k
views
Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
11.3 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
1.8k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
11.4 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
11.6 years ago Jiang, Mike ★ 1.3k
45 results • Page 1 of 1
Recent ...
Replies
Comment: Getting a large intercept with DESeq2 by Michael Love 43k
Thanks James -- Denise you can check the "note on factor levels" in the vignette. And I'd recommend `plotCounts()` for looking at individu…
Comment: Getting a large intercept with DESeq2 by James W. MacDonald 68k
As a trivial example, consider this: ``` > model.matrix(~Treatment, data.frame(Treatment = factor(rep(1:3, each = 4)))) (Intercept) Tre…
Answer: Getting a large intercept with DESeq2 by James W. MacDonald 68k
The default parameterization in R is a treatment-contrasts parameterization that sets one of your groups as the baseline. So the intercept …
Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C by ATpoint ★ 5.0k
There is no "MUST", but pseudobulk aggregation is beneficial to a) enable use of tested and robust methods such as limma (though it could u…
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Yes, we use limpa for PTMs ourselves. I assume your data is preprocessed so that each row corresponds to a PTM. You replace dpcQuant() with…
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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