Showing : opencyto • reset
5
votes
11
replies
1.8k
views
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
updated 4.9 years ago by ★ 1.3k • written 4.9 years ago by • 0
1
vote
9
replies
3.1k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
8.3 years ago anders.tondell ▴ 30
4
votes
8
replies
2.8k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
updated 8.4 years ago by ▴ 240 • written 8.5 years ago by • 0
0
votes
7
replies
1.4k
views
RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
updated 5.3 years ago by ★ 1.3k • written 5.4 years ago by • 0
0
votes
6
replies
1.5k
views
How to select left hand side of mindensity2 gate
openCyto mindensity
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by ▴ 20
0
votes
6
replies
1.7k
views
opencyto Error in .validity_check_alias
opencyto
updated 6.5 years ago by ★ 1.3k • written 6.6 years ago by ▴ 20
4
votes
5
replies
1.1k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.1 years ago by ▴ 310 • written 4.1 years ago by • 0
2
votes
5
replies
1.9k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by ▴ 10
1
vote
5
replies
1.9k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 10
1
vote
5
replies
1.5k
views
custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
4.7 years ago k.teijgeler • 0
0
votes
5
replies
2.0k
views
openCyto fails to load
opencyto bioclite
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 20
1
vote
5
replies
1.8k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 30
2
votes
4
replies
1.3k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by • 0
5
votes
4
replies
3.1k
views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
updated 9.3 years ago by ▴ 150 • written 9.3 years ago by ▴ 10
0
votes
4
replies
1.6k
views
Issues parsing workspace in openCyto
opencyto
8.8 years ago JK ▴ 10
1
vote
4
replies
1.5k
views
openCyto trouble importing xml file
opencyto bioconductor R
7.4 years ago Rivka • 0
0
votes
4
replies
2.7k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.2 years ago by ★ 1.3k • written 6.6 years ago by ▴ 70
1
vote
3
replies
1.4k
views
OpenCyto - getting gate coordinates
opencyto
8.0 years ago Ulrik Stervbo ▴ 30
7
votes
3
replies
1.3k
views
Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
updated 4.0 years ago by ▴ 310 • written 4.0 years ago by ▴ 30
3
votes
3
replies
1.7k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 5.6 years ago by ★ 1.3k • written 6.5 years ago by ▴ 10
0
votes
3
replies
2.0k
views
openCyto: compilation failure during installation
opencyto rhdf5 compilation error
8.3 years ago gmirkin • 0
1
vote
2
replies
1.2k
views
openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
0
votes
2
replies
667
views
openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
3.9 years ago geoffreylewen • 0
0
votes
1
reply
2.6k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by • 0
0
votes
1
reply
878
views
Fail to load openCyto
opencyto bioconductor
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 10
4
votes
1
reply
1.7k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.6 years ago Greg Finak ▴ 150
2
votes
1
reply
1.7k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 8.1 years ago by ▴ 10 • written 8.1 years ago by ▴ 10
0
votes
1
reply
2.2k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
0
votes
1
reply
1.2k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
2
votes
1
reply
1.0k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by • 0
2
votes
1
reply
1.1k
views
openCyto displaying gating panels
opencyto
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by • 0
1
vote
1
reply
1.2k
views
Add flowclust gate to gatingset
opencyto flowclust
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by ▴ 20
0
votes
1
reply
1.4k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
9.9 years ago • updated 9.8 years ago Jiang, Mike ★ 1.3k
0
votes
1
reply
685
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.0 years ago by ▴ 310 • written 4.1 years ago by • 0
1
vote
1
reply
609
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
0
votes
1
reply
1.8k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.1 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
292
views
OpenCyto polyFunctions
openCyto
9 months ago Albert • 0
0
votes
0
replies
1.3k
views
Re: FlowStats help
flowclust opencyto flowcytometry
9.1 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.4k
views
openCyto transitional gate
flow cytometry opencyto
9.1 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
442
views
openCyto 2.8.0: error in prior_flowclust
prior_flowclust openCyto
22 months ago martin.andres • 0
0
votes
0
replies
446
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
18 months ago Noël • 0
1
vote
0
replies
1.7k
views
Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
9.7 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
547
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
17 months ago Dennis.hinkel • 0
0
votes
0
replies
922
views
Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
10.1 years ago Jiang, Mike ★ 1.3k
44 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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