Showing : rnaseqgene • reset
0
votes
2
replies
1.3k
views
Interaction in Design Experimental
rnaseqGene
7 months ago • updated 6 months ago Ferdinand David • 0
1
vote
4
replies
2.3k
views
Heatmap of the Count Matrix
rnaseqGene
updated 3 months ago by • 0 • written 7 months ago by • 0
0
votes
1
reply
879
views
Workflow to Analyse DNA Sequence specify gene expression in a fungus under stress
rnaseqGene
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
3
replies
933
views
RNA-seq with DESeq2 shrinkage estimation
Regression DESeq2 rnaseqGene
updated 17 months ago by 68k • written 17 months ago by • 0
3
votes
6
replies
1.4k
views
A question occur when using DESeq2 on a complex design
DESeq2 rnaseqGene RNASeq
written 17 months ago by • 0
0
votes
3
replies
976
views
Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
17 months ago gallantk5 • 0
0
votes
0
replies
740
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
18 months ago JG13 • 0
2
votes
2
replies
919
views
Control group between 2 batches have different expression in RNAseq data
BatchQC BatchEffect rnaseqGene Normalization
updated 19 months ago by ▴ 10 • written 19 months ago by • 0
1
vote
2
replies
850
views
Deseq2
DESeq2 rnaseqGene
updated 19 months ago by ▴ 220 • written 19 months ago by • 0
0
votes
1
reply
741
views
normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 20 months ago by ★ 5.0k • written 20 months ago by • 0
2
votes
7
replies
2.0k
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
20 months ago sajadahmad41454 • 0
0
votes
2
replies
904
views
RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 21 months ago by 53k • written 21 months ago by • 0
3
votes
5
replies
1.8k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 22 months ago by 43k • written 22 months ago by ▴ 10
2
votes
1
reply
786
views
Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 23 months ago by 43k • written 23 months ago by ▴ 20
5
votes
6
replies
1.6k
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
23 months ago Shaimaa Gamal • 0
1
vote
4
replies
1.3k
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 2.2 years ago by 43k • written 2.2 years ago by ▴ 60
0
votes
2
replies
2.2k
views
R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 2.5 years ago by 43k • written 2.5 years ago by • 0
1
vote
3
replies
1.5k
views
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
0
votes
3
replies
3.3k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
1
vote
2
replies
1.5k
views
toptable sort .by set
limma rnaseqGene
3.6 years ago snowmattin • 0
0
votes
1
reply
1.4k
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 4.0 years ago by ★ 5.0k • written 4.0 years ago by • 0
6
votes
10
replies
2.5k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 4.1 years ago by 43k • written 4.2 years ago by ▴ 20
4
votes
1
reply
3.2k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 10
2
votes
2
replies
1.3k
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
4.2 years ago • updated 2.6 years ago diangomaiga • 0
2
votes
2
replies
2.4k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
4.5 years ago SUMIT • 0
0
votes
0
replies
1.2k
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
4.9 years ago Bogdan ▴ 670
1
vote
6
replies
2.1k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
4.9 years ago Seaweed • 0
3
votes
3
replies
1.4k
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 40
1
vote
3
replies
1.2k
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 6.0 years ago by 43k • written 6.0 years ago by ★ 1.5k
0
votes
7
replies
3.8k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
0
votes
2
replies
1.4k
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
6.8 years ago courtney.stairs • 0
1
vote
2
replies
1.7k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 10
3
votes
5
replies
10k
views
How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 6.9 years ago by ★ 1.4k • written 6.9 years ago by • 0
1
vote
3
replies
1.8k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
7.0 years ago melkile26 • 0
2
votes
5
replies
2.2k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 7.7 years ago by 4.2k • written 7.7 years ago by • 0
0
votes
2
replies
1.8k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 7.8 years ago by ▴ 160 • written 7.8 years ago by • 0
0
votes
1
reply
2.1k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 9.5 years ago by ★ 6.8k • written 9.6 years ago by ▴ 20
0
votes
4
replies
2.4k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 9.6 years ago by • 0 • written 9.6 years ago by • 0
2
votes
5
replies
3.7k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
9.8 years ago • updated 9.7 years ago cirisarri95 • 0
0
votes
1
reply
2.4k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 10.2 years ago by ★ 8.2k • written 10.2 years ago by • 0
0
votes
6
replies
4.6k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
10.2 years ago JunLVI ▴ 40
3
votes
2
replies
2.2k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 10.5 years ago by 68k • written 10.5 years ago by • 0
6
votes
8
replies
3.1k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 10.5 years ago by ★ 8.2k • written 10.6 years ago by • 0
0
votes
2
replies
3.7k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 10.6 years ago by 68k • written 10.7 years ago by • 0
0
votes
2
replies
6.7k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
10.7 years ago greg.mulhearn • 0
0
votes
3
replies
2.2k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
10.8 years ago • updated 10.7 years ago Cheng-Yuan Kao ▴ 100
0
votes
0
replies
1.6k
views
Minor error in the RNASeqGene workflow
rnaseqgene
10.9 years ago snf ▴ 10
47 results • Page 1 of 1
Recent ...
Replies
Answer: Guitar R package requires update due to dependency GenomicFeatures by Kevin Blighe ★ 4.0k
Greetings, This issue is indeed caused by recent changes in the Bioconductor 3.20+ release cycle. The function makeTxDbFromGFF() was previ…
Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: Clarification on counting in Rsubread (featureCounts) by Kevin Blighe ★ 4.0k
Dear Luca, This is a very plausible behavior caused by **read assignment ambiguity** due to **overlapping gene coordinates** (specifical…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Guitar R package requires update due to dependency GenomicFeatures by Frank • 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
Votes
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
Answer: Limma-voom sample weights and impact on DEG numbers
Awards • All
Teacher to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Locations • All
Finland, 5 minutes ago
United States, 27 minutes ago
United States, 41 minutes ago
The Netherlands, 1 hour ago
United States, 1 hour ago
Traffic: 2639 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6