Showing : rnaseqgene • reset
0
votes
0
replies
77
views
After running samtools, the featureCounts command crashed.
RNASeqData RNASeq rnaseqGene
18 days ago Rui • 0
0
votes
2
replies
1.2k
views
Interaction in Design Experimental
rnaseqGene
4 months ago Ferdinand David • 0
1
vote
4
replies
2.1k
views
Heatmap of the Count Matrix
rnaseqGene
updated 22 days ago by • 0 • written 4 months ago by • 0
0
votes
1
reply
825
views
Workflow to Analyse DNA Sequence specify gene expression in a fungus under stress
rnaseqGene
updated 4 months ago by 43k • written 4 months ago by • 0
0
votes
3
replies
829
views
RNA-seq with DESeq2 shrinkage estimation
Regression DESeq2 rnaseqGene
updated 14 months ago by 68k • written 14 months ago by • 0
3
votes
6
replies
1.3k
views
A question occur when using DESeq2 on a complex design
DESeq2 rnaseqGene RNASeq
written 14 months ago by • 0
0
votes
3
replies
890
views
Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
14 months ago gallantk5 • 0
0
votes
0
replies
657
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
15 months ago JG13 • 0
2
votes
2
replies
825
views
Control group between 2 batches have different expression in RNAseq data
BatchQC BatchEffect rnaseqGene Normalization
updated 16 months ago by ▴ 10 • written 16 months ago by • 0
1
vote
2
replies
771
views
Deseq2
DESeq2 rnaseqGene
updated 16 months ago by ▴ 220 • written 16 months ago by • 0
0
votes
1
reply
676
views
normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 17 months ago by ★ 4.9k • written 17 months ago by • 0
2
votes
7
replies
1.8k
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
17 months ago sajadahmad41454 • 0
0
votes
2
replies
817
views
RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 18 months ago by 53k • written 18 months ago by • 0
3
votes
5
replies
1.6k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 19 months ago by 43k • written 19 months ago by ▴ 10
2
votes
1
reply
692
views
Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 20 months ago by 43k • written 20 months ago by ▴ 20
5
votes
6
replies
1.4k
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
20 months ago Shaimaa Gamal • 0
1
vote
4
replies
1.1k
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 23 months ago by 43k • written 23 months ago by ▴ 60
0
votes
2
replies
2.1k
views
R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 2.2 years ago by 43k • written 2.2 years ago by • 0
1
vote
3
replies
1.4k
views
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 2.7 years ago by 43k • written 2.8 years ago by • 0
0
votes
3
replies
3.2k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
1
vote
2
replies
1.4k
views
toptable sort .by set
limma rnaseqGene
3.4 years ago snowmattin • 0
0
votes
1
reply
1.3k
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 3.8 years ago by ★ 4.9k • written 3.8 years ago by • 0
6
votes
10
replies
2.3k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 3.9 years ago by 43k • written 3.9 years ago by ▴ 20
4
votes
1
reply
3.1k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 3.9 years ago by 43k • written 4.0 years ago by ▴ 10
2
votes
2
replies
1.3k
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
4.0 years ago • updated 2.4 years ago diangomaiga • 0
2
votes
2
replies
2.3k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
4.3 years ago SUMIT • 0
0
votes
0
replies
1.1k
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
4.6 years ago Bogdan ▴ 670
1
vote
6
replies
2.0k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
4.7 years ago • updated 4.6 years ago Seaweed • 0
3
votes
3
replies
1.3k
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 5.4 years ago by 43k • written 5.4 years ago by ▴ 40
1
vote
3
replies
1.1k
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 5.7 years ago by 43k • written 5.7 years ago by ★ 1.5k
0
votes
7
replies
3.7k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
0
votes
2
replies
1.3k
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
6.6 years ago courtney.stairs • 0
1
vote
2
replies
1.6k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 6.7 years ago by 68k • written 6.7 years ago by ▴ 10
3
votes
5
replies
10.0k
views
How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 6.7 years ago by ★ 1.4k • written 6.7 years ago by • 0
1
vote
3
replies
1.8k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
6.8 years ago melkile26 • 0
2
votes
5
replies
2.2k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 7.5 years ago by 4.2k • written 7.5 years ago by • 0
0
votes
2
replies
1.7k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 7.6 years ago by ▴ 160 • written 7.6 years ago by • 0
0
votes
1
reply
2.1k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 9.3 years ago by ★ 6.8k • written 9.3 years ago by ▴ 20
0
votes
4
replies
2.3k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 9.3 years ago by • 0 • written 9.4 years ago by • 0
2
votes
5
replies
3.6k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
9.5 years ago cirisarri95 • 0
0
votes
1
reply
2.3k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 9.9 years ago by ★ 8.2k • written 9.9 years ago by • 0
0
votes
6
replies
4.5k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
10.0 years ago JunLVI ▴ 40
3
votes
2
replies
2.2k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 10.2 years ago by 68k • written 10.2 years ago by • 0
6
votes
8
replies
3.0k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 10.3 years ago by ★ 8.2k • written 10.3 years ago by • 0
0
votes
2
replies
3.6k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 10.4 years ago by 68k • written 10.4 years ago by • 0
0
votes
2
replies
6.6k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
10.5 years ago greg.mulhearn • 0
0
votes
3
replies
2.1k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
10.5 years ago Cheng-Yuan Kao ▴ 100
0
votes
0
replies
1.5k
views
Minor error in the RNASeqGene workflow
rnaseqgene
10.6 years ago snf ▴ 10
48 results • Page 1 of 1
Recent ...
Replies
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Joseph • 0
Popular Question to zhe ▴ 20
Popular Question to Natalia • 0
Locations • All
Vietnam, 17 minutes ago
The city by the bay, 1 hour ago
San Diego, 1 hour ago
United States, 2 hours ago
Pittsburgh, United States, 2 hours ago
Traffic: 993 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6