Showing : wgcna • reset
0
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4
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2.6k
views
WGCNA soft threshold with methylation data but no scale-free topology
methylation EPIC scale-free topology WGCNA
updated 3.0 years ago by • 0 • written 6.3 years ago by • 0
0
votes
3
replies
1.6k
views
Help Generating Heat-maps between samples using WGCNA
WGCNA
6.4 years ago kgopotso.phakwago • 0
0
votes
0
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1.2k
views
Error on labeledHeatmap() function - WGCNA 1.68
WGCNA R
6.4 years ago feltrin88 • 0
1
vote
2
replies
1.1k
views
Using WGCNA for purposes other than RNA-SEQ/Microarray
WGCNA R
updated 6.4 years ago by ★ 3.0k • written 6.4 years ago by • 0
0
votes
1
reply
1.2k
views
use differences in expression as input for co-expression network?
wgcna co-expression
updated 6.4 years ago by ▴ 280 • written 6.5 years ago by ▴ 50
9
votes
4
replies
9.1k
views
WGCNA sample size minimum: why?
wgcna
updated 17 months ago by • 0 • written 6.5 years ago by ▴ 180
2
votes
6
replies
2.7k
views
RNA-Seq normalization for co-expression analysis
edger WGCNA limma
updated 6.5 years ago by 53k • written 6.5 years ago by ▴ 50
1
vote
1
reply
2.0k
views
how to filter genes in significant module?
RNA WGCNA filter
6.5 years ago modarzi ▴ 10
0
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0
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1.0k
views
Error: non-numeric matrix extent in pickSoftThreshold.fromSimilarity, WGCNA
WGCNA
6.5 years ago MartinRK • 0
0
votes
3
replies
2.1k
views
Module membership vs gene significance result and Modules-trait relationships reuslt have a different trend
WGCNA
updated 8 months ago by • 0 • written 6.5 years ago by • 0
1
vote
2
replies
3.1k
views
WGCNA on methylation data
normalization DNA methylation WGCNA
updated 6.5 years ago by ★ 3.0k • written 6.5 years ago by • 0
5
votes
3
replies
1.7k
views
Steep dendrograms and few modules. WGCNA on RNA seq data
RNA seq wgcna
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by ▴ 20
0
votes
1
reply
2.5k
views
Error installing WGCNA for R 3.6 in RStudio Version 1.2.1335
installation error WGCNA compilation
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by • 0
5
votes
3
replies
3.2k
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna coexpression sva
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by ▴ 280
1
vote
5
replies
1.9k
views
Error in sizeRestrictedClusterMerge: replace is not a multiple of replacement length
wgcna
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by ▴ 760
7
votes
4
replies
5.0k
views
Minimum number of samples per treatment/group for WGCNA analysis
WGCNA RNA-seq GCN gene coexpression network
updated 6.6 years ago by ▴ 20 • written 6.6 years ago by ▴ 50
1
vote
1
reply
1.0k
views
Module preservation using adjacency matrix (WGCNA)
wgcna
updated 6.7 years ago by ★ 3.0k • written 6.7 years ago by ▴ 30
4
votes
3
replies
1.5k
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 6.7 years ago by ★ 3.0k • written 6.7 years ago by ▴ 80
7
votes
9
replies
6.2k
views
WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 3.0 years ago by ★ 3.0k • written 6.7 years ago by ▴ 10
0
votes
1
reply
1.4k
views
WGCNA::modulePreservation - Error in make.unique(rownames(datRef)) : 'names' must be a character vector
R WGCNA
6.7 years ago Alex Nesmelov • 0
0
votes
0
replies
926
views
Plotting consensus eigengene networks for specific interesting modules?
wgcna
6.7 years ago rc1253 • 0
0
votes
1
reply
1.2k
views
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
error wgcna affymetrix data
updated 6.7 years ago by ★ 3.0k • written 6.7 years ago by • 0
1
vote
3
replies
2.1k
views
WGCNA Parameter Enforcement Stymied by Prior Batch-normalization of Multi-cohort Data?
median polish minKmeToStay bottleneck nodes reassignThresh WGCNA
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by • 0
0
votes
0
replies
1.1k
views
WGCNA: net$colors and module colors don't match up; module assignments are different
WGCNA
6.8 years ago cats_dogs ▴ 20
3
votes
1
reply
2.5k
views
Consensus modules preservation WGCNA
WGCNA Networks
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by ▴ 20
0
votes
1
reply
2.7k
views
Module membership vs gene significance does not correlate (WGCNA)
wgcna module membership gene significance
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by • 0
1
vote
1
reply
903
views
co-expresson network between LncRNA-mRNA
WGCNA
6.8 years ago yaghoub.amraei • 0
2
votes
3
replies
1.9k
views
Correlate WGCNA modules from 2 separate analyses (small and large RNA)
WGCNA
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by ▴ 60
4
votes
6
replies
1.8k
views
WGCNA: consensusTOM() doesn't save TOMs & returns setNames error (but sets are named)
WGCNA
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by ▴ 20
1
vote
2
replies
2.1k
views
Normalized transcript/exon counts for network analysis
drimseq dexseq wgcna sva
updated 6.9 years ago by ▴ 90 • written 6.9 years ago by ▴ 30
1
vote
2
replies
2.1k
views
WGCNA - confounding effect based on technical variables (some continuous)
WGCNA batch effect continuous
updated 6.9 years ago by ★ 3.0k • written 6.9 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Isoform coexpression using WGCNA
WGCNA
6.9 years ago maya.kappil ▴ 30
0
votes
1
reply
2.2k
views
WGCNA soft threshold power showing very strange values
wgcna soft threshold r scale independence scale free topology model fit
updated 6.9 years ago by ★ 3.0k • written 6.9 years ago by • 0
1
vote
3
replies
3.4k
views
WGCNA: cleaning for sample outliers
microarray gene network WGCNA
updated 7.0 years ago by 0 • written 7.0 years ago by • 0
9
votes
7
replies
5.5k
views
WGCNA: relate modules to binary trait
WGCNA module eigengene binary trait R
updated 7.0 years ago by ▴ 30 • written 7.0 years ago by ▴ 50
1
vote
1
reply
1.9k
views
WGCNA threshold without prior knowledge of scale-free propery
wgcna weighted correlation network analysis correlation matrix scale-free topology metagenomics
updated 7.0 years ago by ★ 3.0k • written 7.0 years ago by • 0
0
votes
3
replies
4.4k
views
Module preservation WGCNA
wgcna wgcna package modulepreservation
written 7.1 years ago by ▴ 40
0
votes
1
reply
2.6k
views
WGCNA: Matching eigengenes to samples
wgcna wgcna package
7.1 years ago Jack • 0
12
votes
4
replies
5.2k
views
WGCNA following salmon/DESeq2
deseq2 wgcna salmon
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by ▴ 30
0
votes
2
replies
1.7k
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package wgcna
7.1 years ago anni.djurhuus • 0
3
votes
9
replies
3.6k
views
problem for finding soft thresholding in WGCNA algorithm
wgcna abline function Scale independence diagram
7.2 years ago modarzi ▴ 10
0
votes
0
replies
833
views
WGCNA chooseOneHubInEachModule Error
WGCNA chooseOneHubInEachModule
7.2 years ago sharvari gujja ▴ 40
6
votes
2
replies
6.6k
views
WGCNA: how to change module color
wgcna
updated 7.2 years ago by ★ 3.0k • written 7.2 years ago by ▴ 20
1
vote
0
replies
1.7k
views
dynamicTreeCut and WGCNA show clusters overlapping. Why is this?
dynamictreecut wgcna hierarchical clustering
7.3 years ago jol.espinoz ▴ 40
0
votes
0
replies
1.5k
views
consensus module relationship
wgcna wgcna package consensus
7.3 years ago 2323982403 ▴ 60
2
votes
4
replies
2.1k
views
Segfault error when loading WGCNA
wgcna wgcna package
7.3 years ago antoinefelden ▴ 10
0
votes
5
replies
2.2k
views
WGCNA Co-expression network analysis on cuffdiff output
WGCNA cuffdiff
7.3 years ago sbbinfo90 • 0
0
votes
1
reply
1.4k
views
How to interpret WGCNA exported result?
wgcna
updated 7.3 years ago by ★ 3.0k • written 7.3 years ago by • 0
2
votes
2
replies
6.5k
views
WGCNA extract genes from a module
WGCNA wgcna package
updated 7.4 years ago by ★ 3.0k • written 7.4 years ago by ▴ 10
1
vote
3
replies
1.9k
views
SampleNetwork in WGCNA
wgcna wgcna package
7.4 years ago 2323982403 ▴ 60
336 results • Page 4 of 7
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
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